Result of FASTA (ccds) for
pF1KB6516
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6516, 385 aa
1>>>pF1KB6516 385 - 385 aa - 385 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8664+/-0.00119; mu= 14.9057+/- 0.071
mean_var=159.7018+/-29.145, 0's: 0 Z-trim(107.4): 152 B-trim: 6 in 1/50
Lambda= 0.101489
statistics sampled from 9391 (9556) to 9391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.294), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS53427.1 SELL gene_id:6402|Hs108|chr1 ( 385) 2817 424.9 5.8e-119
CCDS1282.1 SELP gene_id:6403|Hs108|chr1 ( 830) 1229 192.9 9e-49
CCDS1283.1 SELE gene_id:6401|Hs108|chr1 ( 610) 1148 180.8 2.8e-45
>>CCDS53427.1 SELL gene_id:6402|Hs108|chr1 (385 aa)
initn: 2817 init1: 2817 opt: 2817 Z-score: 2249.2 bits: 424.9 E(32554): 5.8e-119
Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB6 MGCRRTREGPSKAMIFPWKCQSTQRDLWNIFKLWGWTMLCCDFLAHHGTDCWTYHYSEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGCRRTREGPSKAMIFPWKCQSTQRDLWNIFKLWGWTMLCCDFLAHHGTDCWTYHYSEKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 HGECVEIINNYTCNCDVGYYGPQCQFVIQCEPLEAPELGTMDCTHPLGNFSFSSQCAFSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HGECVEIINNYTCNCDVGYYGPQCQFVIQCEPLEAPELGTMDCTHPLGNFSFSSQCAFSC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SEGTNLTGIEETTCGPFGNWSSPEPTCQVIQCEPLSAPDLGIMNCSHPLASFSFTSACTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SEGTNLTGIEETTCGPFGNWSSPEPTCQVIQCEPLSAPDLGIMNCSHPLASFSFTSACTF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFSMIKEGDYNPLFIPVAVMVTAFSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFSMIKEGDYNPLFIPVAVMVTAFSG
310 320 330 340 350 360
370 380
pF1KB6 LAFIIWLARRLKKGKKSKRSMNDPY
:::::::::::::::::::::::::
CCDS53 LAFIIWLARRLKKGKKSKRSMNDPY
370 380
>>CCDS1282.1 SELP gene_id:6403|Hs108|chr1 (830 aa)
initn: 3469 init1: 1225 opt: 1229 Z-score: 989.1 bits: 192.9 E(32554): 9e-49
Smith-Waterman score: 1229; 51.3% identity (74.5% similar) in 310 aa overlap (21-330:11-320)
10 20 30 40 50 60
pF1KB6 MGCRRTREGPSKAMIFPWKCQSTQRDLWNIFKLWGWTMLCCDFLAHHGTDCWTYHYSEKP
: :: ...: .: .. : .. .. . :::::: :
CCDS12 MANCQIAILYQRFQRVVFGISQLLCFSALISELTNQKEVAAWTYHYSTKA
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSL
..:. .:..:.. :::::::::: ::.::.:.::. ::::::::: . ::::::.:.:
CCDS12 YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVLPYYSSYYWIGIRKNNKTWTWVGTKKAL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSG
:.:::::.:.:::::.:.::::::::: . :::::. : : : ::::::::: :::
CCDS12 TNEAENWADNEPNNKRNNEDCVEIYIKSPSAPGKWNDEHCLKKKHALCYTASCQDMSCSK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 HGECVEIINNYTCNCDVGYYGPQCQFVIQCEPLEAPELGTMDCTHPLGNFSFSSQCAFSC
.:::.: :.::::.: :.:::.:..: .: :: :. :.:.::::::::.:::.: :
CCDS12 QGECLETIGNYTCSCYPGFYGPECEYVRECGELELPQHVLMNCSHPLGNFSFNSQCSFHC
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 SEGTNLTGIEETTCGPFGNWSSPEPTCQVIQCEPLSAPDLGIMNCSHPLASFSFTSACTF
..: ...: . : : :.. : : . :: ::. :. : :.: : .:. :.:.:
CCDS12 TDGYQVNGPSKLECLASGIWTNKPPQCLAAQCPPLKIPERGNMTCLHSAKAFQHQSSCSF
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFSMIKEGDYNPLFIPVAVMVTAFSG
: :: :.: . . : .::.:. :.:.:.
CCDS12 SCEEGFALVGPEVVQCTASGVWTAPAPVCKAVQCQHLEAPSEGTMDCVHPLTAFAYGSSC
300 310 320 330 340 350
>--
initn: 1826 init1: 452 opt: 456 Z-score: 377.4 bits: 79.7 E(32554): 1.1e-14
Smith-Waterman score: 482; 37.1% identity (66.9% similar) in 178 aa overlap (158-332:336-508)
130 140 150 160 170 180
pF1KB6 GDGEPNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEI
: : : .:. : .::. . :. : :.
CCDS12 CTASGVWTAPAPVCKAVQCQHLEAPSEGTMDCVHPL-TAFAYGSSCK-FECQP-GYRVRG
310 320 330 340 350 360
190 200 210 220 230 240
pF1KB6 INNYTCNCDVGYYG---PQCQFVIQCEPLEAPELGTMDCTHPLGNFSFSSQCAFSCSEGT
.. : : :... : :. .:.:::::.: :.:::. : :.....:.: :.::
CCDS12 LDMLRC-IDSGHWSAPLPTCE-AISCEPLESPVHGSMDCSPSLRAFQYDTNCSFRCAEGF
370 380 390 400 410 420
250 260 270 280 290 300
pF1KB6 NLTGIEETTCGPFGNWSSPEPTCQVIQCEPLSAPDLGIMNCSHPLASFSFTSACTFICSE
: : . . : .:.:..: :.::..::. : .:. . .:::::...: . :.:.: :.:
CCDS12 MLRGADIVRCDNLGQWTAPAPVCQALQCQDLPVPNEARVNCSHPFGAFRYQSVCSFTCNE
430 440 450 460 470 480
310 320 330 340 350 360
pF1KB6 GTELIGKKKTICESSGIWSNPSPICQKLDKSFSMIKEGDYNPLFIPVAVMVTAFSGLAFI
: :.: . : ..: :.. : :: .
CCDS12 GLLLVGASVLQCLATGNWNSVPPECQAIPCTPLLSPQNGTMTCVQPLGSSSYKSTCQFIC
490 500 510 520 530 540
>--
initn: 576 init1: 373 opt: 414 Z-score: 344.2 bits: 73.5 E(32554): 7.5e-13
Smith-Waterman score: 414; 28.6% identity (54.1% similar) in 266 aa overlap (127-382:560-810)
100 110 120 130 140 150
pF1KB6 RSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGKWN
: :. : . : : :.. : . .
CCDS12 SSYKSTCQFICDEGYSLSGPERLDCTRSGRWTDSPPMCEAIK--CPELF------APEQG
530 540 550 560 570 580
160 170 180 190 200
pF1KB6 DDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYG---PQCQFV------
. : .. . ..:. .::. .: .: :: :. . : .. : :. .
CCDS12 SLDCSDTRGEFNVGSTCH-FSCD-NGFKLEGPNNVECTTS-GRWSATPPTCKGIASLPTP
590 600 610 620 630
210 220 230 240 250 260
pF1KB6 -IQCEPLEAPELGTMDCTHPLGNFSFSSQCAFSCSEGTNLTGIEETTCGPFGNWSSPEPT
.:: : .: ::: : : :.:.:.. : :.:. : .: : .: : :.:.. :.
CCDS12 GVQCPALTTPGQGTMYCRHHPGTFGFNTTCYFGCNAGFTLIGDSTLSCRPSGQWTAVTPA
640 650 660 670 680 690
270 280 290 300 310 320
pF1KB6 CQVIQCEPLSAPDLGIMNCSHPLASFSFTSACTFICSEGTELIGKKKTICESSGIWSNPS
:....: : . ::::. ..::. : :.: : :: : :. .: :. .: ::.
CCDS12 CRAVKCSELHVNKPIAMNCSNLWGNFSYGSICSFHCLEGQLLNGSAQTACQENGHWSTTV
700 710 720 730 740 750
330 340 350 360 370 380
pF1KB6 PICQKLDKSFSMIKEGDYNPLFIPVAVMVTAFSGLAFIIWLARRLKKGKKSKRSMNDPY
: :: . :.:. . . :: . . : ... : .:... .: .:
CCDS12 PTCQAGPLT---IQEA-LTYFGGAVASTIGLIMGGTLLALLRKRFRQKDDGKCPLNPHSH
760 770 780 790 800 810
CCDS12 LGTYGVFTNAAFDPSP
820 830
>>CCDS1283.1 SELE gene_id:6401|Hs108|chr1 (610 aa)
initn: 1278 init1: 1092 opt: 1148 Z-score: 926.4 bits: 180.8 E(32554): 2.8e-45
Smith-Waterman score: 1148; 52.7% identity (78.9% similar) in 279 aa overlap (52-330:22-300)
30 40 50 60 70 80
pF1KB6 STQRDLWNIFKLWGWTMLCCDFLAHHGTDCWTYHYSEKPMNWQRARRFCRDNYTDLVAIQ
:.:. : . :....: .:.. :: :::::
CCDS12 MIASQFLSALTLVLLIKESGAWSYNTSTEAMTYDEASAYCQQRYTHLVAIQ
10 20 30 40 50
90 100 110 120 130 140
pF1KB6 NKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGEPNNKKNKEDC
:: :::::.. : .: :::::::::....:.::::.: :::::.::. :::::... :::
CCDS12 NKEEIEYLNSILSYSPSYYWIGIRKVNNVWVWVGTQKPLTEEAKNWAPGEPNNRQKDEDC
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB6 VEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYG
:::::::.::.: :::. : : : ::::::.: :::::::::: ::::::.:: :. :
CCDS12 VEIYIKREKDVGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSG
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB6 PQCQFVIQCEPLEAPELGTMDCTHPLGNFSFSSQCAFSCSEGTNLTGIEETTCGPFGNWS
.:. ...: ::.:: :.. :.:::::::..:.:..::..: ...: : :.::
CCDS12 LKCEQIVNCTALESPEHGSLVCSHPLGNFSYNSSCSISCDRGYLPSSMETMQCMSSGEWS
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB6 SPEPTCQVIQCEPLSAPDLGIMNCSHPLASFSFTSACTFICSEGTELIGKKKTICESSGI
.: :.:.:..:. .. : :...: . .:: ....::: : :: ::.: .. : :::
CCDS12 APIPACNVVECDAVTNPANGFVECFQNPGSFPWNTTCTFDCEEGFELMGAQSLQCTSSGN
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB6 WSNPSPICQKLDKSFSMIKEGDYNPLFIPVAVMVTAFSGLAFIIWLARRLKKGKKSKRSM
:.: .: :.
CCDS12 WDNEKPTCKAVTCRAVRQPQNGSVRCSHSPAGEFTFKSSCNFTCEEGFMLQGPAQVECTT
300 310 320 330 340 350
385 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:10:35 2016 done: Sat Nov 5 04:10:36 2016
Total Scan time: 2.230 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]