FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6519, 362 aa
  1>>>pF1KB6519 362 - 362 aa - 362 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1513+/-0.000345; mu= 17.2059+/- 0.022
 mean_var=67.2459+/-13.310, 0's: 0 Z-trim(113.9): 10  B-trim: 0 in 0/52
 Lambda= 0.156402
 statistics sampled from 23493 (23496) to 23493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.275), width:  16
 Scan time:  7.970

The best scores are:                                      opt bits E(85289)
NP_057698 (OMIM: 605764,616949) tyrosyl-DNA phosph ( 362) 2425 556.1 4.3e-158


>>NP_057698 (OMIM: 605764,616949) tyrosyl-DNA phosphodie  (362 aa)
 initn: 2425 init1: 2425 opt: 2425  Z-score: 2959.2  bits: 556.1 E(85289): 4.3e-158
Smith-Waterman score: 2425; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)

               10        20        30        40        50        60
pF1KB6 MELGSCLEGGREAAEEEGEPEVKKRRLLCVEFASVASCDAAVAQCFLAENDWEMERALNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MELGSCLEGGREAAEEEGEPEVKKRRLLCVEFASVASCDAAVAQCFLAENDWEMERALNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YFEPPVEESALERRPETISEPKTYVDLTNEETTDSTTSKISPSEDTQQENGSMFSLITWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YFEPPVEESALERRPETISEPKTYVDLTNEETTDSTTSKISPSEDTQQENGSMFSLITWN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 MNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNLDI
              310       320       330       340       350       360

         
pF1KB6 IL
       ::
NP_057 IL
         




362 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:25:47 2016 done: Sat Nov  5 20:25:48 2016
 Total Scan time:  7.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]