Result of FASTA (omim) for
pF1KB6531
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6531, 366 aa
1>>>pF1KB6531 366 - 366 aa - 366 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3109+/-0.000335; mu= 7.5238+/- 0.021
mean_var=119.1242+/-23.944, 0's: 0 Z-trim(118.5): 103 B-trim: 1373 in 1/55
Lambda= 0.117510
statistics sampled from 31401 (31504) to 31401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.369), width: 16
Scan time: 8.390
The best scores are: opt bits E(85289)
NP_599150 (OMIM: 605053) RISC-loading complex subu ( 366) 2424 421.7 1.3e-117
XP_005269171 (OMIM: 605053) PREDICTED: RISC-loadin ( 345) 2284 397.9 1.8e-110
NP_599151 (OMIM: 605053) RISC-loading complex subu ( 345) 2284 397.9 1.8e-110
XP_005269172 (OMIM: 605053) PREDICTED: RISC-loadin ( 345) 2284 397.9 1.8e-110
NP_004169 (OMIM: 605053) RISC-loading complex subu ( 345) 2284 397.9 1.8e-110
XP_006719644 (OMIM: 605053) PREDICTED: RISC-loadin ( 267) 1771 310.9 2.2e-84
XP_016875400 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 1484 262.2 8.2e-70
XP_011537014 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 1484 262.2 8.2e-70
XP_005269177 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 1484 262.2 8.2e-70
XP_005269179 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 1484 262.2 8.2e-70
XP_005269174 (OMIM: 605053) PREDICTED: RISC-loadin ( 256) 1370 242.9 6.1e-64
XP_016875399 (OMIM: 605053) PREDICTED: RISC-loadin ( 235) 1230 219.1 7.9e-57
XP_011510365 (OMIM: 603424,612067) PREDICTED: inte ( 228) 330 66.6 6.5e-11
NP_001132989 (OMIM: 603424,612067) interferon-indu ( 302) 332 67.0 6.6e-11
NP_001132990 (OMIM: 603424,612067) interferon-indu ( 288) 329 66.4 9e-11
NP_003681 (OMIM: 603424,612067) interferon-inducib ( 313) 329 66.5 9.7e-11
XP_011510368 (OMIM: 603424,612067) PREDICTED: inte ( 200) 320 64.8 1.9e-10
XP_016860648 (OMIM: 603424,612067) PREDICTED: inte ( 200) 320 64.8 1.9e-10
NP_001303291 (OMIM: 603424,612067) interferon-indu ( 200) 320 64.8 1.9e-10
XP_016870387 (OMIM: 611138) PREDICTED: spermatid p ( 648) 217 47.6 9.4e-05
XP_016870386 (OMIM: 611138) PREDICTED: spermatid p ( 657) 217 47.6 9.5e-05
NP_001164608 (OMIM: 611138) spermatid perinuclear ( 658) 217 47.6 9.5e-05
XP_016870385 (OMIM: 611138) PREDICTED: spermatid p ( 672) 217 47.6 9.7e-05
XP_016870383 (OMIM: 611138) PREDICTED: spermatid p ( 672) 217 47.6 9.7e-05
XP_016870384 (OMIM: 611138) PREDICTED: spermatid p ( 672) 217 47.6 9.7e-05
NP_060857 (OMIM: 611138) spermatid perinuclear RNA ( 672) 217 47.6 9.7e-05
XP_016870379 (OMIM: 611138) PREDICTED: spermatid p ( 674) 217 47.6 9.7e-05
XP_016870382 (OMIM: 611138) PREDICTED: spermatid p ( 674) 217 47.6 9.7e-05
XP_016870380 (OMIM: 611138) PREDICTED: spermatid p ( 674) 217 47.6 9.7e-05
XP_016870381 (OMIM: 611138) PREDICTED: spermatid p ( 674) 217 47.6 9.7e-05
NP_703194 (OMIM: 603182) interleukin enhancer-bind ( 690) 216 47.5 0.00011
NP_004507 (OMIM: 603182) interleukin enhancer-bind ( 702) 216 47.5 0.00011
NP_036350 (OMIM: 603182) interleukin enhancer-bind ( 894) 216 47.5 0.00014
XP_016882254 (OMIM: 603182) PREDICTED: interleukin ( 563) 210 46.4 0.00019
XP_011526289 (OMIM: 603182) PREDICTED: interleukin ( 563) 210 46.4 0.00019
XP_016882253 (OMIM: 603182) PREDICTED: interleukin ( 633) 210 46.4 0.00021
NP_001131145 (OMIM: 603182) interleukin enhancer-b ( 706) 210 46.4 0.00023
XP_011526287 (OMIM: 603182) PREDICTED: interleukin ( 777) 210 46.5 0.00025
XP_006722805 (OMIM: 603182) PREDICTED: interleukin ( 855) 210 46.5 0.00027
NP_060090 (OMIM: 603182) interleukin enhancer-bind ( 898) 210 46.5 0.00028
XP_011526286 (OMIM: 603182) PREDICTED: interleukin ( 898) 210 46.5 0.00028
XP_016882252 (OMIM: 603182) PREDICTED: interleukin ( 898) 210 46.5 0.00028
NP_059348 (OMIM: 601716) double-stranded RNA-bindi ( 496) 192 43.3 0.0014
NP_004593 (OMIM: 601716) double-stranded RNA-bindi ( 496) 192 43.3 0.0014
NP_059346 (OMIM: 601716) double-stranded RNA-bindi ( 496) 192 43.3 0.0014
NP_001306063 (OMIM: 601716) double-stranded RNA-bi ( 502) 192 43.3 0.0014
NP_001032405 (OMIM: 601716) double-stranded RNA-bi ( 502) 192 43.3 0.0014
XP_005260584 (OMIM: 601716) PREDICTED: double-stra ( 502) 192 43.3 0.0014
NP_001309856 (OMIM: 601716) double-stranded RNA-bi ( 502) 192 43.3 0.0014
NP_001309860 (OMIM: 601716) double-stranded RNA-bi ( 536) 192 43.3 0.0015
>>NP_599150 (OMIM: 605053) RISC-loading complex subunit (366 aa)
initn: 2424 init1: 2424 opt: 2424 Z-score: 2232.3 bits: 421.7 E(85289): 1.3e-117
Smith-Waterman score: 2424; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
310 320 330 340 350 360
pF1KB6 IMAGSK
::::::
NP_599 IMAGSK
>>XP_005269171 (OMIM: 605053) PREDICTED: RISC-loading co (345 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2104.4 bits: 397.9 E(85289): 1.8e-110
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 345 aa overlap (22-366:1-345)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
:::::::::::::::::::::::::::::::::::::::
XP_005 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
280 290 300 310 320 330
pF1KB6 IMAGSK
::::::
XP_005 IMAGSK
340
>>NP_599151 (OMIM: 605053) RISC-loading complex subunit (345 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2104.4 bits: 397.9 E(85289): 1.8e-110
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 345 aa overlap (22-366:1-345)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
:::::::::::::::::::::::::::::::::::::::
NP_599 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_599 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
280 290 300 310 320 330
pF1KB6 IMAGSK
::::::
NP_599 IMAGSK
340
>>XP_005269172 (OMIM: 605053) PREDICTED: RISC-loading co (345 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2104.4 bits: 397.9 E(85289): 1.8e-110
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 345 aa overlap (22-366:1-345)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
:::::::::::::::::::::::::::::::::::::::
XP_005 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
280 290 300 310 320 330
pF1KB6 IMAGSK
::::::
XP_005 IMAGSK
340
>>NP_004169 (OMIM: 605053) RISC-loading complex subunit (345 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2104.4 bits: 397.9 E(85289): 1.8e-110
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 345 aa overlap (22-366:1-345)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
:::::::::::::::::::::::::::::::::::::::
NP_004 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
280 290 300 310 320 330
pF1KB6 IMAGSK
::::::
NP_004 IMAGSK
340
>>XP_006719644 (OMIM: 605053) PREDICTED: RISC-loading co (267 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1636.1 bits: 310.9 E(85289): 2.2e-84
Smith-Waterman score: 1771; 100.0% identity (100.0% similar) in 267 aa overlap (100-366:1-267)
70 80 90 100 110 120
pF1KB6 DTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAA
::::::::::::::::::::::::::::::
XP_006 MLEPALEDSSSFSPLDSSLPEDIPVFTAAA
10 20 30
130 140 150 160 170 180
pF1KB6 AATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHR
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB6 KEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGV
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB6 GSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHV
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK
220 230 240 250 260
>>XP_016875400 (OMIM: 605053) PREDICTED: RISC-loading co (222 aa)
initn: 1484 init1: 1484 opt: 1484 Z-score: 1374.4 bits: 262.2 E(85289): 8.2e-70
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 222 aa overlap (145-366:1-222)
120 130 140 150 160 170
pF1KB6 DSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWR
::::::::::::::::::::::::::::::
XP_016 MELQPPVSPQQSECNPVGALQELVVQKGWR
10 20 30
180 190 200 210 220 230
pF1KB6 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
160 170 180 190 200 210
360
pF1KB6 ALQYLKIMAGSK
::::::::::::
XP_016 ALQYLKIMAGSK
220
>>XP_011537014 (OMIM: 605053) PREDICTED: RISC-loading co (222 aa)
initn: 1484 init1: 1484 opt: 1484 Z-score: 1374.4 bits: 262.2 E(85289): 8.2e-70
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 222 aa overlap (145-366:1-222)
120 130 140 150 160 170
pF1KB6 DSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWR
::::::::::::::::::::::::::::::
XP_011 MELQPPVSPQQSECNPVGALQELVVQKGWR
10 20 30
180 190 200 210 220 230
pF1KB6 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
160 170 180 190 200 210
360
pF1KB6 ALQYLKIMAGSK
::::::::::::
XP_011 ALQYLKIMAGSK
220
>>XP_005269177 (OMIM: 605053) PREDICTED: RISC-loading co (222 aa)
initn: 1484 init1: 1484 opt: 1484 Z-score: 1374.4 bits: 262.2 E(85289): 8.2e-70
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 222 aa overlap (145-366:1-222)
120 130 140 150 160 170
pF1KB6 DSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWR
::::::::::::::::::::::::::::::
XP_005 MELQPPVSPQQSECNPVGALQELVVQKGWR
10 20 30
180 190 200 210 220 230
pF1KB6 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
160 170 180 190 200 210
360
pF1KB6 ALQYLKIMAGSK
::::::::::::
XP_005 ALQYLKIMAGSK
220
>>XP_005269179 (OMIM: 605053) PREDICTED: RISC-loading co (222 aa)
initn: 1484 init1: 1484 opt: 1484 Z-score: 1374.4 bits: 262.2 E(85289): 8.2e-70
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 222 aa overlap (145-366:1-222)
120 130 140 150 160 170
pF1KB6 DSSLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWR
::::::::::::::::::::::::::::::
XP_005 MELQPPVSPQQSECNPVGALQELVVQKGWR
10 20 30
180 190 200 210 220 230
pF1KB6 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNEVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
160 170 180 190 200 210
360
pF1KB6 ALQYLKIMAGSK
::::::::::::
XP_005 ALQYLKIMAGSK
220
366 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:17:28 2016 done: Sat Nov 5 01:17:29 2016
Total Scan time: 8.390 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]