Result of FASTA (ccds) for
pF1KB6541
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6541, 361 aa
1>>>pF1KB6541 361 - 361 aa - 361 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7711+/-0.000978; mu= -5.0447+/- 0.059
mean_var=436.0453+/-92.238, 0's: 0 Z-trim(116.5): 81 B-trim: 133 in 1/53
Lambda= 0.061420
statistics sampled from 17084 (17162) to 17084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.527), width: 16
Scan time: 2.860
The best scores are: opt bits E(32554)
CCDS4056.1 SSBP2 gene_id:23635|Hs108|chr5 ( 361) 2635 247.1 1.8e-65
CCDS75268.1 SSBP2 gene_id:23635|Hs108|chr5 ( 369) 2609 244.8 9e-65
CCDS30726.1 SSBP3 gene_id:23648|Hs108|chr1 ( 361) 2233 211.4 9.5e-55
CCDS32960.1 SSBP4 gene_id:170463|Hs108|chr19 ( 363) 1966 187.8 1.3e-47
CCDS590.1 SSBP3 gene_id:23648|Hs108|chr1 ( 368) 1851 177.6 1.5e-44
CCDS58961.1 SSBP2 gene_id:23635|Hs108|chr5 ( 331) 1752 168.8 6.1e-42
CCDS58962.1 SSBP2 gene_id:23635|Hs108|chr5 ( 339) 1726 166.5 3e-41
CCDS58963.1 SSBP2 gene_id:23635|Hs108|chr5 ( 341) 1620 157.1 2.1e-38
CCDS58960.1 SSBP2 gene_id:23635|Hs108|chr5 ( 298) 1481 144.7 9.6e-35
CCDS591.1 SSBP3 gene_id:23648|Hs108|chr1 ( 388) 993 101.6 1.2e-21
CCDS12378.1 SSBP4 gene_id:170463|Hs108|chr19 ( 385) 921 95.2 9.8e-20
>>CCDS4056.1 SSBP2 gene_id:23635|Hs108|chr5 (361 aa)
initn: 2635 init1: 2635 opt: 2635 Z-score: 1288.9 bits: 247.1 E(32554): 1.8e-65
Smith-Waterman score: 2635; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
310 320 330 340 350 360
pF1KB6 V
:
CCDS40 V
>>CCDS75268.1 SSBP2 gene_id:23635|Hs108|chr5 (369 aa)
initn: 1435 init1: 1386 opt: 2609 Z-score: 1276.3 bits: 244.8 E(32554): 9e-65
Smith-Waterman score: 2609; 97.8% identity (97.8% similar) in 369 aa overlap (1-361:1-369)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
:::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS75 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
310 320 330 340 350 360
360
pF1KB6 YSPSMTMSV
:::::::::
CCDS75 YSPSMTMSV
>>CCDS30726.1 SSBP3 gene_id:23648|Hs108|chr1 (361 aa)
initn: 2024 init1: 1211 opt: 2233 Z-score: 1096.4 bits: 211.4 E(32554): 9.5e-55
Smith-Waterman score: 2233; 83.2% identity (94.2% similar) in 364 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
:..::: .::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MFAKGK--GSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
:::::::::::::::::::.:::::::::::::::::::::::::::::.:::: ::.::
CCDS30 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::: ::::::.:. :: :::::.:::::..:::::::::::::: ::::.:
CCDS30 GFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP
120 130 140 150 160 170
190 200 210 220 230
pF1KB6 PRGMVPLGP--QNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG
:::: :.:: ::::..:::: :.:: :.:::.:::::.:::::::..::::::::.:::
CCDS30 PRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLG
.:::::::::::::::::::::::::.::.::..: :::: .: ::::::::::::::.:
CCDS30 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 GMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQSESYSPSM
::: :::::::::::.:.. ::::::.: .:: :::::::::.:::::. ::...:::::
CCDS30 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM
300 310 320 330 340 350
360
pF1KB6 TMSV
::::
CCDS30 TMSV
360
>>CCDS32960.1 SSBP4 gene_id:170463|Hs108|chr19 (363 aa)
initn: 1846 init1: 1390 opt: 1966 Z-score: 968.5 bits: 187.8 E(32554): 1.3e-47
Smith-Waterman score: 1966; 73.7% identity (91.0% similar) in 365 aa overlap (1-361:1-363)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS32 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
CCDS32 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
CCDS32 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
CCDS32 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
CCDS32 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
:: ::.::::::::::.. :.::. .. ::: ::::::::::. :.::.:: ::::::.
CCDS32 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
300 310 320 330 340 350
360
pF1KB6 MTMSV
:::::
CCDS32 MTMSV
360
>>CCDS590.1 SSBP3 gene_id:23648|Hs108|chr1 (368 aa)
initn: 1624 init1: 819 opt: 1851 Z-score: 913.4 bits: 177.6 E(32554): 1.5e-44
Smith-Waterman score: 2100; 79.2% identity (90.3% similar) in 371 aa overlap (1-361:1-368)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
:..::: .::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MFAKGK--GSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
:::::::::::::::::::.:::::::::::::::::::::::::::::.:::: ::.::
CCDS59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 GFFQ-PFMSPRYPGGPRPP-----LRIPN-QALGGVPGSQPLLPSGMDPTRQQGHPNMGG
:::: : : : . :: . :. : :::::.:::::..::::::::::::::
CCDS59 GFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPPGGVPGTQPLLPNSMDPTRQQGHPNMGG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 PMQRMTPPRGMVPLGP--QNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIP
::::.::::: :.:: ::::..:::: :.:: :.:::.:::::.:::::::..:::::
CCDS59 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 YSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSD
:::.:::.:::::::::::::::::::::::::.::.::..: :::: .: :::::::::
CCDS59 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 GPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQS
:::::.:::: :::::::::::.:.. ::::::.: .:: :::::::::.:::::. ::.
CCDS59 GPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQN
300 310 320 330 340 350
360
pF1KB6 ESYSPSMTMSV
..:::::::::
CCDS59 DNYSPSMTMSV
360
>>CCDS58961.1 SSBP2 gene_id:23635|Hs108|chr5 (331 aa)
initn: 2401 init1: 1752 opt: 1752 Z-score: 866.5 bits: 168.8 E(32554): 6.1e-42
Smith-Waterman score: 2345; 91.7% identity (91.7% similar) in 361 aa overlap (1-361:1-331)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDY--------------------------
70 80 90
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----PFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
280 290 300 310 320 330
pF1KB6 V
:
CCDS58 V
>>CCDS58962.1 SSBP2 gene_id:23635|Hs108|chr5 (339 aa)
initn: 1934 init1: 1258 opt: 1726 Z-score: 853.9 bits: 166.5 E(32554): 3e-41
Smith-Waterman score: 2319; 89.7% identity (89.7% similar) in 369 aa overlap (1-361:1-339)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDY--------------------------
70 80 90
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----PFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
100 110 120 130 140 150
190 200 210 220 230
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
:::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
280 290 300 310 320 330
360
pF1KB6 YSPSMTMSV
:::::::::
CCDS58 YSPSMTMSV
>>CCDS58963.1 SSBP2 gene_id:23635|Hs108|chr5 (341 aa)
initn: 1600 init1: 1600 opt: 1620 Z-score: 803.1 bits: 157.1 E(32554): 2.1e-38
Smith-Waterman score: 2426; 94.5% identity (94.5% similar) in 361 aa overlap (1-361:1-341)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
:::: ::::::::::::::::::::::::::::::::::::
CCDS58 GFFQ--------------------ALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
290 300 310 320 330 340
pF1KB6 V
:
CCDS58 V
>>CCDS58960.1 SSBP2 gene_id:23635|Hs108|chr5 (298 aa)
initn: 2234 init1: 1476 opt: 1481 Z-score: 737.3 bits: 144.7 E(32554): 9.6e-35
Smith-Waterman score: 2074; 89.3% identity (90.2% similar) in 328 aa overlap (1-328:1-297)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDY--------------------------
70 80 90
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----PFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::: ::. :..:
CCDS58 ESHHMNGSLGSGDMDSISKYSPS-MTMSV
280 290
>>CCDS591.1 SSBP3 gene_id:23648|Hs108|chr1 (388 aa)
initn: 1624 init1: 819 opt: 993 Z-score: 502.2 bits: 101.6 E(32554): 1.2e-21
Smith-Waterman score: 2169; 77.5% identity (87.7% similar) in 391 aa overlap (1-361:1-388)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
:..::: .::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MFAKGK--GSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
:::::::::::::::::::.:::::::::::::::::::::::::::::.:::: ::.::
CCDS59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP
60 70 80 90 100 110
130 140 150
pF1KB6 GFFQ---------------------------PFMSPRYPGGPRPPLRIPNQALGGVPGSQ
:::: ::::::: ::::::.:. :: :::::.:
CCDS59 GFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGP--QNYGGAMRPPLNALGGPGMPGM
::::..:::::::::::::: ::::.::::: :.:: ::::..:::: :.:: :.:::.
CCDS59 PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGI
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTL
:::::.:::::::..::::::::.:::.:::::::::::::::::::::::::.::.::.
CCDS59 NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB6 MNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQ
.: :::: .: ::::::::::::::.:::: :::::::::::.:.. ::::::.: .::
CCDS59 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP
300 310 320 330 340 350
340 350 360
pF1KB6 PGTPRDDGEMGGNFLNPFQSESYSPSMTMSV
:::::::::.:::::. ::...:::::::::
CCDS59 PGTPRDDGELGGNFLHSFQNDNYSPSMTMSV
360 370 380
361 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:08:53 2016 done: Fri Nov 4 16:08:53 2016
Total Scan time: 2.860 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]