FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6543, 369 aa
  1>>>pF1KB6543 369 - 369 aa - 369 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6936+/-0.000788; mu= 15.2572+/- 0.047
 mean_var=79.8297+/-16.126, 0's: 0 Z-trim(109.6): 55  B-trim: 0 in 0/52
 Lambda= 0.143546
 statistics sampled from 10954 (11009) to 10954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.338), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS14406.1 IL2RG gene_id:3561|Hs108|chrX          ( 369) 2581 543.8 8.7e-155
CCDS14565.1 IL13RA2 gene_id:3598|Hs108|chrX        ( 380)  316 74.8 1.4e-13


>>CCDS14406.1 IL2RG gene_id:3561|Hs108|chrX               (369 aa)
 initn: 2581 init1: 2581 opt: 2581  Z-score: 2892.4  bits: 543.8 E(32554): 8.7e-155
Smith-Waterman score: 2581; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KB6 MLKPSLPFTSLLFLQLPLLGVGLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MLKPSLPFTSLLFLQLPLLGVGLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QCFVFNVEYMNCTWNSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QCFVFNVEYMNCTWNSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 HCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SHPIHWGSNTSKENPFLFALEAVVISVGSMGLIISLLCVYFWLERTMPRIPTLKNLEDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SHPIHWGSNTSKENPFLFALEAVVISVGSMGLIISLLCVYFWLERTMPRIPTLKNLEDLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TEYHGNFSAWSGVSKGLAESLQPDYSERLCLVSEIPPKGGALGEGPGASPCNQHSPYWAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TEYHGNFSAWSGVSKGLAESLQPDYSERLCLVSEIPPKGGALGEGPGASPCNQHSPYWAP
              310       320       330       340       350       360

                
pF1KB6 PCYTLKPET
       :::::::::
CCDS14 PCYTLKPET
                

>>CCDS14565.1 IL13RA2 gene_id:3598|Hs108|chrX             (380 aa)
 initn: 189 init1:  97 opt: 316  Z-score: 357.2  bits: 74.8 E(32554): 1.4e-13
Smith-Waterman score: 316; 25.9% identity (56.6% similar) in 251 aa overlap (31-268:115-360)

               10        20        30        40        50        60
pF1KB6 MLKPSLPFTSLLFLQLPLLGVGLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEV
                                     ::.: . ...  ::.  .  ..    . ..
CCDS14 ITKNLHYKDGFDLNKGIEAKIHTLLPWQCTNGSE-VQSSWAETTYWISPQGIPETKVQDM
           90       100       110        120       130       140   

               70         80        90       100       110         
pF1KB6 QCFVFNVEYMNCTWNSS-SEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQK
       .:  .: .:. :.:. . .    :: .: :::.. :.  . .:  :. ..  . ::..  
CCDS14 DCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDH--ALQCVDYIKADGQNIGCRFPY
           150       160       170       180         190       200 

     120       130         140       150       160       170       
pF1KB6 KEIHLYQTFVVQLQDPRE--PRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN--
        :   :. : . ..   :  : :..   ..:::.: :  :  ::. . :  ...:.:.  
CCDS14 LEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIP
             210       220       230       240       250       260 

          180       190       200       210       220       230    
pF1KB6 -NRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSA
        . .  .:... .. : : : . .  .:.  . ..: ...  ..  : :::. :  :.. 
CCDS14 LGPIPARCFDYEIEIRED-DTTLVTATVE-NETYTLKTTNETRQLCFVVRSKVNIYCSDD
             270        280        290       300       310         

          240        250             260       270       280       
pF1KB6 QHWSEWSHPIHW-GSNTSKEN------PFLFALEAVVISVGSMGLIISLLCVYFWLERTM
         :::::    : : . ::..      :: : :  :.. .:                   
CCDS14 GIWSEWSDKQCWEGEDLSKKTLLRFWLPFGFILILVIFVTGLLLRKPNTYPKMIPEFFCD
     320       330       340       350       360       370         

       290       300       310       320       330       340       
pF1KB6 PRIPTLKNLEDLVTEYHGNFSAWSGVSKGLAESLQPDYSERLCLVSEIPPKGGALGEGPG
                                                                   
CCDS14 T                                                           
     380                                                           




369 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:18:03 2016 done: Sat Nov  5 01:18:03 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]