Result of FASTA (omim) for
pF1KB6550
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6550, 392 aa
1>>>pF1KB6550 392 - 392 aa - 392 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0882+/-0.000565; mu= -15.6521+/- 0.035
mean_var=415.0974+/-85.833, 0's: 0 Z-trim(118.7): 313 B-trim: 777 in 1/57
Lambda= 0.062951
statistics sampled from 31504 (31898) to 31504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.374), width: 16
Scan time: 9.480
The best scores are: opt bits E(85289)
NP_057103 (OMIM: 613056) putative RNA-binding prot ( 392) 2567 247.5 4.2e-65
NP_001231514 (OMIM: 613056) putative RNA-binding p ( 389) 2455 237.3 4.8e-62
NP_001257572 (OMIM: 613056) putative RNA-binding p ( 391) 2433 235.3 1.9e-61
NP_958815 (OMIM: 607782) putative RNA-binding prot ( 371) 1769 175.0 2.6e-43
NP_001307155 (OMIM: 607782) putative RNA-binding p ( 325) 1750 173.2 7.8e-43
NP_060502 (OMIM: 607782) putative RNA-binding prot ( 325) 1750 173.2 7.8e-43
XP_016878926 (OMIM: 607782) PREDICTED: putative RN ( 318) 1431 144.2 4e-34
XP_005255484 (OMIM: 607782) PREDICTED: putative RN ( 318) 1431 144.2 4e-34
NP_001317349 (OMIM: 607782) putative RNA-binding p ( 272) 1412 142.5 1.2e-33
XP_011520863 (OMIM: 607782) PREDICTED: putative RN ( 338) 1236 126.5 9.1e-29
XP_016878927 (OMIM: 607782) PREDICTED: putative RN ( 285) 1231 126.0 1.1e-28
XP_005255486 (OMIM: 607782) PREDICTED: putative RN ( 285) 1231 126.0 1.1e-28
XP_016878929 (OMIM: 607782) PREDICTED: putative RN ( 239) 1212 124.2 3.2e-28
NP_057508 (OMIM: 609434) luc7-like protein 3 isofo ( 432) 849 91.5 4.2e-18
NP_006098 (OMIM: 609434) luc7-like protein 3 isofo ( 432) 849 91.5 4.2e-18
XP_005257506 (OMIM: 609434) PREDICTED: luc7-like p ( 472) 849 91.5 4.5e-18
NP_001317259 (OMIM: 609434) luc7-like protein 3 is ( 489) 849 91.5 4.6e-18
XP_005257509 (OMIM: 609434) PREDICTED: luc7-like p ( 442) 825 89.3 1.9e-17
XP_006722006 (OMIM: 609434) PREDICTED: luc7-like p ( 413) 661 74.4 5.6e-13
NP_067062 (OMIM: 612427) RNA-binding protein 25 [H ( 843) 368 48.0 9.8e-05
XP_011535346 (OMIM: 612427) PREDICTED: RNA-binding ( 843) 368 48.0 9.8e-05
XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding ( 638) 360 47.2 0.00013
XP_005266364 (OMIM: 616453) PREDICTED: zinc finger (1696) 348 46.5 0.00059
XP_005266363 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_005266360 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_005266359 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_005266358 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_005266362 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_016875965 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_016875964 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
XP_005266361 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.5 0.00059
NP_055885 (OMIM: 616453) zinc finger CCCH domain-c (1564) 311 43.1 0.0057
XP_005266369 (OMIM: 616453) PREDICTED: zinc finger (1564) 311 43.1 0.0057
NP_001317495 (OMIM: 616453) zinc finger CCCH domai (1668) 311 43.1 0.006
NP_001317494 (OMIM: 616453) zinc finger CCCH domai (1668) 311 43.1 0.006
NP_001317496 (OMIM: 616453) zinc finger CCCH domai (1668) 311 43.1 0.006
XP_016875967 (OMIM: 616453) PREDICTED: zinc finger (1669) 311 43.1 0.006
NP_001070256 (OMIM: 616453) zinc finger CCCH domai (1669) 311 43.1 0.006
XP_005266367 (OMIM: 616453) PREDICTED: zinc finger (1669) 311 43.1 0.006
XP_016875966 (OMIM: 616453) PREDICTED: zinc finger (1669) 311 43.1 0.006
XP_016875969 (OMIM: 616453) PREDICTED: zinc finger (1669) 311 43.1 0.006
XP_016875968 (OMIM: 616453) PREDICTED: zinc finger (1669) 311 43.1 0.006
NP_001317493 (OMIM: 616453) zinc finger CCCH domai (1669) 311 43.1 0.006
>>NP_057103 (OMIM: 613056) putative RNA-binding protein (392 aa)
initn: 2567 init1: 2567 opt: 2567 Z-score: 1289.9 bits: 247.5 E(85289): 4.2e-65
Smith-Waterman score: 2567; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392)
10 20 30 40 50 60
pF1KB6 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
310 320 330 340 350 360
370 380 390
pF1KB6 DRDRKDKKRSYESANGRSEDRRSSEEREAGEI
::::::::::::::::::::::::::::::::
NP_057 DRDRKDKKRSYESANGRSEDRRSSEEREAGEI
370 380 390
>>NP_001231514 (OMIM: 613056) putative RNA-binding prote (389 aa)
initn: 2444 init1: 2444 opt: 2455 Z-score: 1234.9 bits: 237.3 E(85289): 4.8e-62
Smith-Waterman score: 2455; 97.2% identity (99.2% similar) in 387 aa overlap (7-392:3-389)
10 20 30 40 50
pF1KB6 MSAQAQMRAMLDQLMGTS-RDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGEC
....: ...:.: : :::::::::::::::::::::::::::::::::::::::
NP_001 MVIHSQLKKIQGASERMGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGEC
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 AAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 SSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 NQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREK
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 RHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSP
300 310 320 330 340 350
360 370 380 390
pF1KB6 RDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
:::::::::::::::::::::::::::::::::
NP_001 RDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
360 370 380
>>NP_001257572 (OMIM: 613056) putative RNA-binding prote (391 aa)
initn: 2432 init1: 2432 opt: 2433 Z-score: 1224.1 bits: 235.3 E(85289): 1.9e-61
Smith-Waterman score: 2433; 96.2% identity (97.4% similar) in 392 aa overlap (7-392:1-391)
10 20 30 40 50
pF1KB6 MSAQAQMRAMLDQLMGTSRDG------DTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRM
: :.:. :.:. : . :::::::::::::::::::::::::::::::::
NP_001 MPAYLN-LQGSVRKAPHSPSRDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRM
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 DLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 ISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 NSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 KQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 KSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSS
300 310 320 330 340 350
360 370 380 390
pF1KB6 RDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
::::::::::::::::::::::::::::::::::::::
NP_001 RDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
360 370 380 390
>>NP_958815 (OMIM: 607782) putative RNA-binding protein (371 aa)
initn: 1577 init1: 1577 opt: 1769 Z-score: 898.5 bits: 175.0 E(85289): 2.6e-43
Smith-Waterman score: 1817; 73.0% identity (88.8% similar) in 392 aa overlap (1-392:1-371)
10 20 30 40 50 60
pF1KB6 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
:::::::::.:::::::.:::: ::::.::.::::::::::.:::::.:.:::::::::
NP_958 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
:.:::::::::::::::.:.::::::::::.::::.::::::.::::::::::::::::.
NP_958 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
::::.::::::::::::::.:::::::::.::::.. ::::.::::.:::: ::::::::
NP_958 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
:::::::::::::::::::::::::::::::::::::::.:::::..:...:::::::::
NP_958 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
:.::.:::::::::: . ::: :.... .:::::..::.:::: ::::.. .::.::...
NP_958 QDRLRRREEREREERLS-RRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRH
250 260 270 280 290
310 320 330 340 350 360
pF1KB6 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
.:::::: ::.::.:.: .::::: .: . :.:: .. : . :: .:.:
NP_958 RRHRSRS--RSHSRGHRR---ASRDRS---AKYKFSRERASREE--SWESGRS--ERGPP
300 310 320 330 340
370 380 390
pF1KB6 DRDRKDKKRSYESANGRSEDRRSSEEREAGEI
: ::.::. .::: ::.:::::
NP_958 DW-------RLESSNGKMASRRS-EEKEAGEI
350 360 370
>>NP_001307155 (OMIM: 607782) putative RNA-binding prote (325 aa)
initn: 2125 init1: 1529 opt: 1750 Z-score: 890.0 bits: 173.2 E(85289): 7.8e-43
Smith-Waterman score: 1750; 80.1% identity (95.4% similar) in 327 aa overlap (1-327:1-321)
10 20 30 40 50 60
pF1KB6 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
:::::::::.:::::::.:::: ::::.::.::::::::::.:::::.:.:::::::::
NP_001 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
:.:::::::::::::::.:.::::::::::.::::.::::::.::::::::::::::::.
NP_001 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
::::.::::::::::::::.:::::::::.::::.. ::::.::::.:::: ::::::::
NP_001 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
:::::::::::::::::::::::::::::::::::::::.:::::..:...:::::::::
NP_001 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
:.::.:::::::::: . ::: :.... .:::::..::.:::: ::::.. .::.::...
NP_001 QDRLRRREEREREERLS-RRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRH
250 260 270 280 290
310 320 330 340 350 360
pF1KB6 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
.::::: :::.::.:.: .:::::
NP_001 RRHRSR--SRSHSRGHRR---ASRDRSAKYK
300 310 320
>>NP_060502 (OMIM: 607782) putative RNA-binding protein (325 aa)
initn: 2125 init1: 1529 opt: 1750 Z-score: 890.0 bits: 173.2 E(85289): 7.8e-43
Smith-Waterman score: 1750; 80.1% identity (95.4% similar) in 327 aa overlap (1-327:1-321)
10 20 30 40 50 60
pF1KB6 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
:::::::::.:::::::.:::: ::::.::.::::::::::.:::::.:.:::::::::
NP_060 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
:.:::::::::::::::.:.::::::::::.::::.::::::.::::::::::::::::.
NP_060 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
::::.::::::::::::::.:::::::::.::::.. ::::.::::.:::: ::::::::
NP_060 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
:::::::::::::::::::::::::::::::::::::::.:::::..:...:::::::::
NP_060 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
:.::.:::::::::: . ::: :.... .:::::..::.:::: ::::.. .::.::...
NP_060 QDRLRRREEREREERLS-RRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRH
250 260 270 280 290
310 320 330 340 350 360
pF1KB6 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
.::::: :::.::.:.: .:::::
NP_060 RRHRSR--SRSHSRGHRR---ASRDRSAKYK
300 310 320
>>XP_016878926 (OMIM: 607782) PREDICTED: putative RNA-bi (318 aa)
initn: 1239 init1: 1239 opt: 1431 Z-score: 733.5 bits: 144.2 E(85289): 4e-34
Smith-Waterman score: 1479; 71.1% identity (87.3% similar) in 339 aa overlap (54-392:1-318)
30 40 50 60 70 80
pF1KB6 TRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFE
:::::: :.:::::::::::::::.:.:::
XP_016 MDLGECTKIHDLALRADYEIASKERDLFFE
10 20 30
90 100 110 120 130 140
pF1KB6 LDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQL
:::::::.::::.::::::.::::::::::::::::.::::.::::::::::::::.:::
XP_016 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
::::::.::::.. ::::.::::.:::: :::::::::::::::::::::::::::::::
XP_016 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 RRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRS
::::::::::::::::.:::::..:...::::::::::.::.:::::::::: . ::: :
XP_016 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLS-RRSGS
160 170 180 190 200
270 280 290 300 310 320
pF1KB6 HSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSS
.... .:::::..::.:::: ::::.. .::.::....:::::: ::.::.:.:. :
XP_016 RTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRS--RSHSRGHRRA---S
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB6 RDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRS
:::: .: . :.:: .. : . :: .:.: : ::.::. .:::
XP_016 RDRS---AKYKFSRERASREE--SWESGRS--ERGPPDW-------RLESSNGKMASRRS
270 280 290 300 310
390
pF1KB6 SEEREAGEI
::.:::::
XP_016 -EEKEAGEI
>>XP_005255484 (OMIM: 607782) PREDICTED: putative RNA-bi (318 aa)
initn: 1239 init1: 1239 opt: 1431 Z-score: 733.5 bits: 144.2 E(85289): 4e-34
Smith-Waterman score: 1479; 71.1% identity (87.3% similar) in 339 aa overlap (54-392:1-318)
30 40 50 60 70 80
pF1KB6 TRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFE
:::::: :.:::::::::::::::.:.:::
XP_005 MDLGECTKIHDLALRADYEIASKERDLFFE
10 20 30
90 100 110 120 130 140
pF1KB6 LDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQL
:::::::.::::.::::::.::::::::::::::::.::::.::::::::::::::.:::
XP_005 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
::::::.::::.. ::::.::::.:::: :::::::::::::::::::::::::::::::
XP_005 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 RRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRS
::::::::::::::::.:::::..:...::::::::::.::.:::::::::: . ::: :
XP_005 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLS-RRSGS
160 170 180 190 200
270 280 290 300 310 320
pF1KB6 HSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSS
.... .:::::..::.:::: ::::.. .::.::....:::::: ::.::.:.:. :
XP_005 RTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRS--RSHSRGHRRA---S
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB6 RDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRS
:::: .: . :.:: .. : . :: .:.: : ::.::. .:::
XP_005 RDRS---AKYKFSRERASREE--SWESGRS--ERGPPDW-------RLESSNGKMASRRS
270 280 290 300 310
390
pF1KB6 SEEREAGEI
::.:::::
XP_005 -EEKEAGEI
>>NP_001317349 (OMIM: 607782) putative RNA-binding prote (272 aa)
initn: 1806 init1: 1191 opt: 1412 Z-score: 725.1 bits: 142.5 E(85289): 1.2e-33
Smith-Waterman score: 1412; 79.2% identity (94.9% similar) in 274 aa overlap (54-327:1-268)
30 40 50 60 70 80
pF1KB6 TRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFE
:::::: :.:::::::::::::::.:.:::
NP_001 MDLGECTKIHDLALRADYEIASKERDLFFE
10 20 30
90 100 110 120 130 140
pF1KB6 LDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQL
:::::::.::::.::::::.::::::::::::::::.::::.::::::::::::::.:::
NP_001 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
::::::.::::.. ::::.::::.:::: :::::::::::::::::::::::::::::::
NP_001 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 RRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRS
::::::::::::::::.:::::..:...::::::::::.::.:::::::::: . ::: :
NP_001 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLS-RRSGS
160 170 180 190 200
270 280 290 300 310 320
pF1KB6 HSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSS
.... .:::::..::.:::: ::::.. .::.::....:::::: ::.::.:.:. :
NP_001 RTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRS--RSHSRGHRRA---S
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB6 RDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRS
::::
NP_001 RDRSAKYK
270
>>XP_011520863 (OMIM: 607782) PREDICTED: putative RNA-bi (338 aa)
initn: 1044 init1: 1044 opt: 1236 Z-score: 637.5 bits: 126.5 E(85289): 9.1e-29
Smith-Waterman score: 1539; 65.6% identity (80.6% similar) in 392 aa overlap (1-392:1-338)
10 20 30 40 50 60
pF1KB6 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
:::::::::.:::::::.:::: ::::.::.::::::::::.:::::.:.::
XP_011 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGT--------
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
:::::.::::.::::::.::::::::::::::::.
XP_011 -------------------------AMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
60 70 80
130 140 150 160 170 180
pF1KB6 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
::::.::::::::::::::.:::::::::.::::.. ::::.::::.:::: ::::::::
XP_011 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
:::::::::::::::::::::::::::::::::::::::.:::::..:...:::::::::
XP_011 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB6 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
:.::.:::::::::: . ::: :.... .:::::..::.:::: ::::.. .::.::...
XP_011 QDRLRRREEREREERLS-RRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRH
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB6 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
.:::::: ::.::.:.: .::::: .: . :.:: .. : . :: .:.:
XP_011 RRHRSRS--RSHSRGHRR---ASRDRS---AKYKFSRERASREE--SWESGRS--ERGPP
270 280 290 300 310
370 380 390
pF1KB6 DRDRKDKKRSYESANGRSEDRRSSEEREAGEI
: ::.::. .::: ::.:::::
XP_011 DW-------RLESSNGKMASRRS-EEKEAGEI
320 330
392 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:06:51 2016 done: Fri Nov 4 16:06:52 2016
Total Scan time: 9.480 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]