Result of FASTA (omim) for
pF1KB6551
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6551, 371 aa
1>>>pF1KB6551 371 - 371 aa - 371 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7088+/-0.000531; mu= -3.1490+/- 0.033
mean_var=365.1428+/-73.165, 0's: 0 Z-trim(118.0): 281 B-trim: 0 in 0/57
Lambda= 0.067119
statistics sampled from 30309 (30611) to 30309 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.359), width: 16
Scan time: 9.220
The best scores are: opt bits E(85289)
NP_958815 (OMIM: 607782) putative RNA-binding prot ( 371) 2432 249.6 8.4e-66
NP_001307155 (OMIM: 607782) putative RNA-binding p ( 325) 2122 219.5 8.4e-57
NP_060502 (OMIM: 607782) putative RNA-binding prot ( 325) 2122 219.5 8.4e-57
XP_005255484 (OMIM: 607782) PREDICTED: putative RN ( 318) 2066 214.1 3.6e-55
XP_016878926 (OMIM: 607782) PREDICTED: putative RN ( 318) 2066 214.1 3.6e-55
XP_011520863 (OMIM: 607782) PREDICTED: putative RN ( 338) 1854 193.6 5.6e-49
XP_016878927 (OMIM: 607782) PREDICTED: putative RN ( 285) 1849 193.0 7e-49
XP_005255486 (OMIM: 607782) PREDICTED: putative RN ( 285) 1849 193.0 7e-49
NP_057103 (OMIM: 613056) putative RNA-binding prot ( 392) 1769 185.4 1.9e-46
NP_001317349 (OMIM: 607782) putative RNA-binding p ( 272) 1756 184.0 3.5e-46
NP_001231514 (OMIM: 613056) putative RNA-binding p ( 389) 1659 174.8 3e-43
NP_001257572 (OMIM: 613056) putative RNA-binding p ( 391) 1644 173.3 8.2e-43
XP_016878929 (OMIM: 607782) PREDICTED: putative RN ( 239) 1539 162.9 6.8e-40
NP_057508 (OMIM: 609434) luc7-like protein 3 isofo ( 432) 736 85.5 2.6e-16
NP_006098 (OMIM: 609434) luc7-like protein 3 isofo ( 432) 736 85.5 2.6e-16
XP_005257509 (OMIM: 609434) PREDICTED: luc7-like p ( 442) 736 85.5 2.6e-16
XP_005257506 (OMIM: 609434) PREDICTED: luc7-like p ( 472) 736 85.5 2.7e-16
NP_001317259 (OMIM: 609434) luc7-like protein 3 is ( 489) 736 85.5 2.8e-16
XP_006722006 (OMIM: 609434) PREDICTED: luc7-like p ( 413) 540 66.5 1.3e-10
XP_011535346 (OMIM: 612427) PREDICTED: RNA-binding ( 843) 286 42.2 0.0052
NP_067062 (OMIM: 612427) RNA-binding protein 25 [H ( 843) 286 42.2 0.0052
XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding ( 638) 282 41.7 0.0056
>>NP_958815 (OMIM: 607782) putative RNA-binding protein (371 aa)
initn: 2432 init1: 2432 opt: 2432 Z-score: 1302.3 bits: 249.6 E(85289): 8.4e-66
Smith-Waterman score: 2432; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KB6 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS
310 320 330 340 350 360
370
pF1KB6 RRSEEKEAGEI
:::::::::::
NP_958 RRSEEKEAGEI
370
>>NP_001307155 (OMIM: 607782) putative RNA-binding prote (325 aa)
initn: 2122 init1: 2122 opt: 2122 Z-score: 1140.7 bits: 219.5 E(85289): 8.4e-57
Smith-Waterman score: 2122; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB6 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS
:::::::::::::::::::::::::
NP_001 RHRSRSRSHSRGHRRASRDRSAKYK
310 320
>>NP_060502 (OMIM: 607782) putative RNA-binding protein (325 aa)
initn: 2122 init1: 2122 opt: 2122 Z-score: 1140.7 bits: 219.5 E(85289): 8.4e-57
Smith-Waterman score: 2122; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB6 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS
:::::::::::::::::::::::::
NP_060 RHRSRSRSHSRGHRRASRDRSAKYK
310 320
>>XP_005255484 (OMIM: 607782) PREDICTED: putative RNA-bi (318 aa)
initn: 2066 init1: 2066 opt: 2066 Z-score: 1111.5 bits: 214.1 E(85289): 3.6e-55
Smith-Waterman score: 2066; 100.0% identity (100.0% similar) in 318 aa overlap (54-371:1-318)
30 40 50 60 70 80
pF1KB6 TRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFE
::::::::::::::::::::::::::::::
XP_005 MDLGECTKIHDLALRADYEIASKERDLFFE
10 20 30
90 100 110 120 130 140
pF1KB6 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 TRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAK
220 230 240 250 260 270
330 340 350 360 370
pF1KB6 YKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI
280 290 300 310
>>XP_016878926 (OMIM: 607782) PREDICTED: putative RNA-bi (318 aa)
initn: 2066 init1: 2066 opt: 2066 Z-score: 1111.5 bits: 214.1 E(85289): 3.6e-55
Smith-Waterman score: 2066; 100.0% identity (100.0% similar) in 318 aa overlap (54-371:1-318)
30 40 50 60 70 80
pF1KB6 TRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFE
::::::::::::::::::::::::::::::
XP_016 MDLGECTKIHDLALRADYEIASKERDLFFE
10 20 30
90 100 110 120 130 140
pF1KB6 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 TRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAK
220 230 240 250 260 270
330 340 350 360 370
pF1KB6 YKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI
280 290 300 310
>>XP_011520863 (OMIM: 607782) PREDICTED: putative RNA-bi (338 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 1000.3 bits: 193.6 E(85289): 5.6e-49
Smith-Waterman score: 2137; 91.1% identity (91.1% similar) in 371 aa overlap (1-371:1-338)
10 20 30 40 50 60
pF1KB6 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGT--------
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
:::::::::::::::::::::::::::::::::::
XP_011 -------------------------AMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
60 70 80
130 140 150 160 170 180
pF1KB6 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB6 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB6 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS
270 280 290 300 310 320
370
pF1KB6 RRSEEKEAGEI
:::::::::::
XP_011 RRSEEKEAGEI
330
>>XP_016878927 (OMIM: 607782) PREDICTED: putative RNA-bi (285 aa)
initn: 1849 init1: 1849 opt: 1849 Z-score: 998.5 bits: 193.0 E(85289): 7e-49
Smith-Waterman score: 1849; 100.0% identity (100.0% similar) in 285 aa overlap (87-371:1-285)
60 70 80 90 100 110
pF1KB6 GECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEIS
::::::::::::::::::::::::::::::
XP_016 MDHLESFIAECDRRTELAKKRLAETQEEIS
10 20 30
120 130 140 150 160 170
pF1KB6 AEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQ
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB6 EKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSR
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB6 DRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNG
220 230 240 250 260 270
360 370
pF1KB6 KMASRRSEEKEAGEI
:::::::::::::::
XP_016 KMASRRSEEKEAGEI
280
>>XP_005255486 (OMIM: 607782) PREDICTED: putative RNA-bi (285 aa)
initn: 1849 init1: 1849 opt: 1849 Z-score: 998.5 bits: 193.0 E(85289): 7e-49
Smith-Waterman score: 1849; 100.0% identity (100.0% similar) in 285 aa overlap (87-371:1-285)
60 70 80 90 100 110
pF1KB6 GECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEIS
::::::::::::::::::::::::::::::
XP_005 MDHLESFIAECDRRTELAKKRLAETQEEIS
10 20 30
120 130 140 150 160 170
pF1KB6 AEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQ
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB6 EKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSR
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB6 DRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNG
220 230 240 250 260 270
360 370
pF1KB6 KMASRRSEEKEAGEI
:::::::::::::::
XP_005 KMASRRSEEKEAGEI
280
>>NP_057103 (OMIM: 613056) putative RNA-binding protein (392 aa)
initn: 1577 init1: 1577 opt: 1769 Z-score: 955.1 bits: 185.4 E(85289): 1.9e-46
Smith-Waterman score: 1817; 73.0% identity (88.8% similar) in 392 aa overlap (1-371:1-392)
10 20 30 40 50 60
pF1KB6 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT
:::::::::.:::::::.:::: ::::.::.::::::::::.:::::.:.:::::::::
NP_057 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS
:.:::::::::::::::.:.::::::::::.::::.::::::.::::::::::::::::.
NP_057 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS
::::.::::::::::::::.:::::::::.::::.. ::::.::::.:::: ::::::::
NP_057 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN
:::::::::::::::::::::::::::::::::::::::.:::::..:...:::::::::
NP_057 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 QDRLRRREEREREERLS-RRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRH
:.::.:::::::::: . ::: :.... .:::::..::.:::: ::::.. .::.::...
NP_057 QERLKRREEREREEREKLRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKR
250 260 270 280 290 300
300 310 320 330 340
pF1KB6 RRHRSRS--RSHSRGHRRA---SRDRS---AKYKFSRERASREE--SWESGRS--ERGPP
.:::::: ::.::.:.:. ::::: .: . :.:: .. : . :: .:.:
NP_057 HRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPR
310 320 330 340 350 360
350 360 370
pF1KB6 DW-------RLESSNGKMASRRS-EEKEAGEI
: ::.::. .::: ::.:::::
NP_057 DRDRKDKKRSYESANGRSEDRRSSEEREAGEI
370 380 390
>>NP_001317349 (OMIM: 607782) putative RNA-binding prote (272 aa)
initn: 1756 init1: 1756 opt: 1756 Z-score: 950.1 bits: 184.0 E(85289): 3.5e-46
Smith-Waterman score: 1756; 100.0% identity (100.0% similar) in 272 aa overlap (54-325:1-272)
30 40 50 60 70 80
pF1KB6 TRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFE
::::::::::::::::::::::::::::::
NP_001 MDLGECTKIHDLALRADYEIASKERDLFFE
10 20 30
90 100 110 120 130 140
pF1KB6 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDND
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 TRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAK
220 230 240 250 260 270
330 340 350 360 370
pF1KB6 YKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI
::
NP_001 YK
371 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:05:19 2016 done: Fri Nov 4 16:05:20 2016
Total Scan time: 9.220 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]