Result of FASTA (ccds) for pF1KB6569
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6569, 375 aa
  1>>>pF1KB6569 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0427+/-0.00116; mu= 1.0036+/- 0.071
 mean_var=476.4702+/-96.721, 0's: 0 Z-trim(115.2): 141  B-trim: 0 in 0/54
 Lambda= 0.058757
 statistics sampled from 15572 (15712) to 15572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.483), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS7362.1 SFTPD gene_id:6441|Hs108|chr10          ( 375) 2603 234.5 1.2e-61
CCDS11561.1 COL1A1 gene_id:1277|Hs108|chr17        (1464)  660 70.6 9.9e-12
CCDS2297.1 COL3A1 gene_id:1281|Hs108|chr2          (1466)  638 68.7 3.6e-11
CCDS4436.1 COL23A1 gene_id:91522|Hs108|chr5        ( 540)  625 67.1 4.3e-11
CCDS12222.1 COL5A3 gene_id:50509|Hs108|chr19       (1745)  633 68.4 5.4e-11
CCDS75932.1 COL5A1 gene_id:1289|Hs108|chr9         (1838)  630 68.2 6.6e-11
CCDS6982.1 COL5A1 gene_id:1289|Hs108|chr9          (1838)  630 68.2 6.6e-11


>>CCDS7362.1 SFTPD gene_id:6441|Hs108|chr10               (375 aa)
 initn: 2603 init1: 2603 opt: 2603  Z-score: 1220.4  bits: 234.5 E(32554): 1.2e-61
Smith-Waterman score: 2603; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KB6 MLLFLLSALVLLTQPLGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MLLFLLSALVLLTQPLGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GEKGDPGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GEKGDPGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GAAGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQVQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GAAGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQVQH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 QQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDDGGSEDCVEIFTNGKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDDGGSEDCVEIFTNGKW
              310       320       330       340       350       360

              370     
pF1KB6 NDRACGEKRLVVCEF
       :::::::::::::::
CCDS73 NDRACGEKRLVVCEF
              370     

>>CCDS11561.1 COL1A1 gene_id:1277|Hs108|chr17             (1464 aa)
 initn: 2177 init1: 618 opt: 660  Z-score: 324.0  bits: 70.6 E(32554): 9.9e-12
Smith-Waterman score: 660; 51.3% identity (60.3% similar) in 199 aa overlap (44-236:531-728)

            20        30        40        50        60        70   
pF1KB6 QPLGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRGEKGDPGLPGAAG
                                     :.::::  :  :  :  :  :  : :: ::
CCDS11 VAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG
              510       520       530       540       550       560

            80        90       100       110       120       130   
pF1KB6 QAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGPLGKQGNIGPQG
       : : ::  :: : .:. : .: ::::: .:  :  :  ::::: :  :: ::.:. : ::
CCDS11 QDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG
              570       580       590       600       610       620

           140       150       160       170       180       190   
pF1KB6 KPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQG
        ::: : :: .:: :  :  :  :  : ::: :: : :::.::::. :: : .:: : .:
CCDS11 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG
              630       640       650       660       670       680

              200          210       220       230       240       
pF1KB6 SPGARG---PPGLKGDKGI---PGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAAFSQ
        :: ::   :::  : .:    ::. ::::..: :  :   : . .:::           
CCDS11 FPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG-APGSQGAPGLQGMPGERGAAGLP
              690       700       710        720       730         

       250       260       270       280       290       300       
pF1KB6 YKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAK
                                                                   
CCDS11 GPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP
     740       750       760       770       780       790         

>>CCDS2297.1 COL3A1 gene_id:1281|Hs108|chr2               (1466 aa)
 initn: 3316 init1: 629 opt: 638  Z-score: 314.0  bits: 68.7 E(32554): 3.6e-11
Smith-Waterman score: 638; 49.7% identity (62.3% similar) in 183 aa overlap (46-222:531-713)

          20        30        40        50        60        70     
pF1KB6 LGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRGEKGDPGLPGAAGQA
                                     : ::  :  :  :  :  : :: ::. :..
CCDS22 GEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGES
              510       520       530       540       550       560

          80        90       100       110       120       130     
pF1KB6 GMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGPLGKQGNIGPQGKP
       : ::  :: ::.:. : .: :::::. :  :  :  : ::  : .:: ::.:. :::: :
CCDS22 GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPP
              570       580       590       600       610       620

         140       150       160       170       180       190     
pF1KB6 GPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSP
       :: : .: ::..: :: ::  :  : .:: :: : ::: :  :..:: :. :. :  :.:
CCDS22 GPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP
              630       640       650       660       670       680

         200             210       220       230       240         
pF1KB6 GARGPPGLKGDKGI------PGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAAFSQYK
       : :::::: :  :.      :: .:.:: .: :                           
CCDS22 GERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK
              690       700       710       720       730       740

     250       260       270       280       290       300         
pF1KB6 KVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNE
                                                                   
CCDS22 GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGER
              750       760       770       780       790       800

>>CCDS4436.1 COL23A1 gene_id:91522|Hs108|chr5             (540 aa)
 initn: 1058 init1: 581 opt: 625  Z-score: 312.6  bits: 67.1 E(32554): 4.3e-11
Smith-Waterman score: 625; 46.6% identity (63.2% similar) in 193 aa overlap (44-236:134-321)

            20        30        40        50        60        70   
pF1KB6 QPLGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRGEKGDPGLPGAAG
                                     . : ::..::::  :: :  : :::::  :
CCDS44 AKIRTAREAPSECVCPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKG
           110       120       130       140       150       160   

            80        90       100       110       120       130   
pF1KB6 QAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGPLGKQGNIGPQG
       . : ::. :: : .:..:..: ::: :  :  ::::  :  :: : .:: : .:. : .:
CCDS44 EKGAPGDFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDG
           170       180       190       200       210       220   

           140       150       160       170       180       190   
pF1KB6 KPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQG
       . ::::  ::::: :.:: .:. :. .  :: : .: ::  : :   :  :  :: ::.:
CCDS44 EMGPKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMG-P--RGENGVDGAPGPKG
           230       240       250       260          270       280

           200       210       220       230       240       250   
pF1KB6 SPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAAFSQYKKVEL
        :: ::  :  : .: :: :: .:.. . :  .  . ..::.:                 
CCDS44 EPGHRGTDGAAGPRGAPGLKGEQGDTVVIDYDG--RILDALKGPPGPQGPPGPPGIPGAK
              290       300       310         320       330        

           260       270       280       290       300       310   
pF1KB6 FPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFL
                                                                   
CCDS44 GELGLPGAPGIDGEKGPKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASD
      340       350       360       370       380       390        

>>CCDS12222.1 COL5A3 gene_id:50509|Hs108|chr19            (1745 aa)
 initn: 616 init1: 616 opt: 633  Z-score: 310.9  bits: 68.4 E(32554): 5.4e-11
Smith-Waterman score: 633; 48.0% identity (61.6% similar) in 198 aa overlap (46-237:530-726)

          20        30        40        50        60               
pF1KB6 LGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRGEKGD------PGLP
                                     : :: ::  :  :  : :::      ::::
CCDS12 GLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLP
     500       510       520       530       540       550         

      70        80        90       100       110       120         
pF1KB6 GAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGPLGKQGNI
       :  :: :  :..:  :: :..:  :  :: : :: .: ::: :. :: :  :: :. :  
CCDS12 GEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVT
     560       570       580       590       600       610         

     130       140       150       160       170       180         
pF1KB6 GPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGAAGSAGAM
       : .: :: ::..:: :: : ::.::. :..:: ::.:  :.:::.: ::: :  :  :. 
CCDS12 GIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSD
     620       630       640       650       660       670         

     190       200       210       220       230       240         
pF1KB6 GPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAAFSQYK
       :: : :: .:: : :: .: ::. :  :  : :  ..  .  ..:::.            
CCDS12 GPLGHPGHEGPTGEKGAQGPPGSAGPPGYPG-PRGVKGTSGNRGLQGEKGEKGEDGFPGF
     680       690       700       710        720       730        

     250       260       270       280       290       300         
pF1KB6 KVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNE
                                                                   
CCDS12 KGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGR
      740       750       760       770       780       790        

>>CCDS75932.1 COL5A1 gene_id:1289|Hs108|chr9              (1838 aa)
 initn: 622 init1: 622 opt: 630  Z-score: 309.3  bits: 68.2 E(32554): 6.6e-11
Smith-Waterman score: 634; 47.5% identity (61.3% similar) in 204 aa overlap (45-236:603-805)

           20        30        40        50        60              
pF1KB6 PLGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRG------EKGD---
                                     .: ::: :: : .: ::       :::   
CCDS75 VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGF
            580       590       600       610       620       630  

             70        80        90       100       110       120  
pF1KB6 ---PGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGP
           ::::  :. : :: .:: :: ::.:  :. :  :  :  : ::: :. :: :  ::
CCDS75 DGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGP
            640       650       660       670       680       690  

            130       140       150       160       170       180  
pF1KB6 LGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGA
        :  :  : .:.:::::..::.:: : ::.::. ::.:: ::.:  : :::.:  :. : 
CCDS75 PGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGL
            700       710       720       730       740       750  

            190       200       210       220       230       240  
pF1KB6 AGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQ
        :  :: :: : :: .:::: :: .: :: .:  :  : :  ..  . ...:.:      
CCDS75 PGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPG-PRGVKGADGIRGLKGTKGEKG
            760       770       780       790        800       810 

            250       260       270       280       290       300  
pF1KB6 AAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQ
                                                                   
CCDS75 EDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPG
             820       830       840       850       860       870 

>>CCDS6982.1 COL5A1 gene_id:1289|Hs108|chr9               (1838 aa)
 initn: 622 init1: 622 opt: 630  Z-score: 309.3  bits: 68.2 E(32554): 6.6e-11
Smith-Waterman score: 634; 47.5% identity (61.3% similar) in 204 aa overlap (45-236:603-805)

           20        30        40        50        60              
pF1KB6 PLGYLEAEMKTYSHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRG------EKGD---
                                     .: ::: :: : .: ::       :::   
CCDS69 VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGF
            580       590       600       610       620       630  

             70        80        90       100       110       120  
pF1KB6 ---PGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGP
           ::::  :. : :: .:: :: ::.:  :. :  :  :  : ::: :. :: :  ::
CCDS69 DGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGP
            640       650       660       670       680       690  

            130       140       150       160       170       180  
pF1KB6 LGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGA
        :  :  : .:.:::::..::.:: : ::.::. ::.:: ::.:  : :::.:  :. : 
CCDS69 PGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGL
            700       710       720       730       740       750  

            190       200       210       220       230       240  
pF1KB6 AGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQ
        :  :: :: : :: .:::: :: .: :: .:  :  : :  ..  . ...:.:      
CCDS69 PGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPG-PRGVKGADGIRGLKGTKGEKG
            760       770       780       790        800       810 

            250       260       270       280       290       300  
pF1KB6 AAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQ
                                                                   
CCDS69 EDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPG
             820       830       840       850       860       870 




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:47:21 2016 done: Fri Nov  4 15:47:22 2016
 Total Scan time:  3.340 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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