FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6575, 376 aa
  1>>>pF1KB6575 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6606+/-0.000953; mu= 14.2952+/- 0.057
 mean_var=63.5930+/-12.659, 0's: 0 Z-trim(104.2): 22  B-trim: 0 in 0/49
 Lambda= 0.160831
 statistics sampled from 7750 (7767) to 7750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.239), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS11611.1 RAD51C gene_id:5889|Hs108|chr17        ( 376) 2457 579.0 2.3e-165
CCDS45745.1 RAD51C gene_id:5889|Hs108|chr17        ( 135)  863 209.0   2e-54


>>CCDS11611.1 RAD51C gene_id:5889|Hs108|chr17             (376 aa)
 initn: 2457 init1: 2457 opt: 2457  Z-score: 3082.2  bits: 579.0 E(32554): 2.3e-165
Smith-Waterman score: 2457; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB6 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE
              310       320       330       340       350       360

              370      
pF1KB6 GSLSTRKRSRDPEEEL
       ::::::::::::::::
CCDS11 GSLSTRKRSRDPEEEL
              370      

>>CCDS45745.1 RAD51C gene_id:5889|Hs108|chr17             (135 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 1090.6  bits: 209.0 E(32554): 2e-54
Smith-Waterman score: 863; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
       ::::::::::::::                                              
CCDS45 TEICGAPGVGKTQLW                                             
              130                                                  




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:46:14 2016 done: Fri Nov  4 15:46:14 2016
 Total Scan time:  2.400 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]