Result of FASTA (omim) for
pF1KB6575
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6575, 376 aa
1>>>pF1KB6575 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9607+/-0.000417; mu= 18.4881+/- 0.026
mean_var=64.3156+/-13.374, 0's: 0 Z-trim(110.6): 68 B-trim: 829 in 1/53
Lambda= 0.159925
statistics sampled from 18874 (18942) to 18874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.222), width: 16
Scan time: 8.090
The best scores are: opt bits E(85289)
NP_478123 (OMIM: 189960,602774,613390,613399) DNA ( 376) 2457 575.9 5.1e-164
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377) 2445 573.2 3.5e-163
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342) 1971 463.8 2.7e-130
XP_016880405 (OMIM: 189960,602774,613390,613399) P ( 259) 1708 403.0 4e-112
XP_016880406 (OMIM: 189960,602774,613390,613399) P ( 259) 1708 403.0 4e-112
XP_016880404 (OMIM: 189960,602774,613390,613399) P ( 259) 1708 403.0 4e-112
XP_016880407 (OMIM: 189960,602774,613390,613399) P ( 259) 1708 403.0 4e-112
XP_016880403 (OMIM: 189960,602774,613390,613399) P ( 259) 1708 403.0 4e-112
XP_011523395 (OMIM: 189960,602774,613390,613399) P ( 260) 1696 400.3 2.7e-111
XP_011523394 (OMIM: 189960,602774,613390,613399) P ( 260) 1696 400.3 2.7e-111
XP_011523396 (OMIM: 189960,602774,613390,613399) P ( 260) 1696 400.3 2.7e-111
XP_006722068 (OMIM: 189960,602774,613390,613399) P ( 260) 1696 400.3 2.7e-111
XP_006722067 (OMIM: 189960,602774,613390,613399) P ( 260) 1696 400.3 2.7e-111
XP_016880408 (OMIM: 189960,602774,613390,613399) P ( 225) 1222 290.9 2e-78
NP_002867 (OMIM: 189960,602774,613390,613399) DNA ( 135) 863 207.9 1.2e-53
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair ( 258) 233 62.7 1.1e-09
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair ( 274) 233 62.7 1.2e-09
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332) 233 62.8 1.3e-09
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347) 233 62.8 1.4e-09
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347) 233 62.8 1.4e-09
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347) 233 62.8 1.4e-09
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348) 233 62.8 1.4e-09
NP_002868 (OMIM: 602948) DNA repair protein RAD51 ( 350) 233 62.8 1.4e-09
NP_598194 (OMIM: 602948) DNA repair protein RAD51 ( 350) 233 62.8 1.4e-09
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351) 233 62.8 1.4e-09
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351) 233 62.8 1.4e-09
NP_598193 (OMIM: 602948) DNA repair protein RAD51 ( 384) 233 62.8 1.5e-09
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425) 233 62.9 1.6e-09
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair ( 500) 233 62.9 1.9e-09
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346) 209 57.3 6.4e-08
NP_005423 (OMIM: 114480,600675,613972) DNA repair ( 346) 209 57.3 6.4e-08
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346) 209 57.3 6.4e-08
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346) 209 57.3 6.4e-08
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346) 209 57.3 6.4e-08
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 193 53.6 8.2e-07
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 193 53.6 8.6e-07
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 193 53.6 8.6e-07
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 190 52.8 1.1e-06
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 190 52.8 1.1e-06
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 190 52.9 1.3e-06
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 190 52.9 1.3e-06
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 190 52.9 1.3e-06
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 190 52.9 1.3e-06
NP_002866 (OMIM: 114480,179617,614508) DNA repair ( 339) 190 52.9 1.3e-06
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 190 52.9 1.3e-06
NP_597994 (OMIM: 114480,179617,614508) DNA repair ( 340) 167 47.6 5.3e-05
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340) 167 47.6 5.3e-05
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 163 46.6 9.7e-05
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 160 46.0 0.00016
XP_016884031 (OMIM: 602721) PREDICTED: meiotic rec ( 271) 154 44.5 0.00035
>>NP_478123 (OMIM: 189960,602774,613390,613399) DNA repa (376 aa)
initn: 2457 init1: 2457 opt: 2457 Z-score: 3065.7 bits: 575.9 E(85289): 5.1e-164
Smith-Waterman score: 2457; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB6 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE
310 320 330 340 350 360
370
pF1KB6 GSLSTRKRSRDPEEEL
::::::::::::::::
NP_478 GSLSTRKRSRDPEEEL
370
>>XP_006722064 (OMIM: 189960,602774,613390,613399) PREDI (377 aa)
initn: 2103 init1: 2103 opt: 2445 Z-score: 3050.7 bits: 573.2 E(85289): 3.5e-163
Smith-Waterman score: 2445; 99.7% identity (99.7% similar) in 377 aa overlap (1-376:1-377)
10 20 30 40 50 60
pF1KB6 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 LGESWGHAATIRLIFHWDRKQ-RLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQT
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
XP_006 LGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQT
310 320 330 340 350 360
360 370
pF1KB6 EGSLSTRKRSRDPEEEL
:::::::::::::::::
XP_006 EGSLSTRKRSRDPEEEL
370
>>XP_006722065 (OMIM: 189960,602774,613390,613399) PREDI (342 aa)
initn: 1961 init1: 1961 opt: 1971 Z-score: 2460.3 bits: 463.8 E(85289): 2.7e-130
Smith-Waterman score: 1971; 98.1% identity (98.7% similar) in 310 aa overlap (1-310:1-308)
10 20 30 40 50 60
pF1KB6 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE
:: : : ..
XP_006 LG--WQHCTSHPARRNAQYCFKSNLRDLEILLLLLHVHCKQKVP
310 320 330 340
>>XP_016880405 (OMIM: 189960,602774,613390,613399) PREDI (259 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 2134.1 bits: 403.0 E(85289): 4e-112
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 259 aa overlap (118-376:1-259)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_016 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250
>>XP_016880406 (OMIM: 189960,602774,613390,613399) PREDI (259 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 2134.1 bits: 403.0 E(85289): 4e-112
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 259 aa overlap (118-376:1-259)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_016 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250
>>XP_016880404 (OMIM: 189960,602774,613390,613399) PREDI (259 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 2134.1 bits: 403.0 E(85289): 4e-112
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 259 aa overlap (118-376:1-259)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_016 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250
>>XP_016880407 (OMIM: 189960,602774,613390,613399) PREDI (259 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 2134.1 bits: 403.0 E(85289): 4e-112
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 259 aa overlap (118-376:1-259)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_016 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250
>>XP_016880403 (OMIM: 189960,602774,613390,613399) PREDI (259 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 2134.1 bits: 403.0 E(85289): 4e-112
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 259 aa overlap (118-376:1-259)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_016 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLY
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250
>>XP_011523395 (OMIM: 189960,602774,613390,613399) PREDI (260 aa)
initn: 1354 init1: 1354 opt: 1696 Z-score: 2119.1 bits: 400.3 E(85289): 2.7e-111
Smith-Waterman score: 1696; 99.6% identity (99.6% similar) in 260 aa overlap (118-376:1-260)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_011 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQ-RLATL
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_011 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQSRLATL
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 YKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250 260
>>XP_011523394 (OMIM: 189960,602774,613390,613399) PREDI (260 aa)
initn: 1354 init1: 1354 opt: 1696 Z-score: 2119.1 bits: 400.3 E(85289): 2.7e-111
Smith-Waterman score: 1696; 99.6% identity (99.6% similar) in 260 aa overlap (118-376:1-260)
90 100 110 120 130 140
pF1KB6 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEC
::::::::::::::::::::::::::::::
XP_011 MKTTEICGAPGVGKTQLCMQLAVDVQIPEC
10 20 30
150 160 170 180 190 200
pF1KB6 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSH
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB6 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQ-RLATL
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_011 QMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQSRLATL
160 170 180 190 200 210
330 340 350 360 370
pF1KB6 YKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL
220 230 240 250 260
376 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:46:14 2016 done: Fri Nov 4 15:46:16 2016
Total Scan time: 8.090 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]