FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6593, 377 aa
  1>>>pF1KB6593 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2997+/-0.000807; mu= 12.6780+/- 0.049
 mean_var=86.8643+/-17.495, 0's: 0 Z-trim(109.4): 17  B-trim: 142 in 1/49
 Lambda= 0.137611
 statistics sampled from 10837 (10845) to 10837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.333), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS991.1 PSMD4 gene_id:5710|Hs108|chr1            ( 377) 2416 489.2 2.4e-138
CCDS81375.1 PSMD4 gene_id:5710|Hs108|chr1          ( 380) 2400 486.1 2.2e-137


>>CCDS991.1 PSMD4 gene_id:5710|Hs108|chr1                 (377 aa)
 initn: 2416 init1: 2416 opt: 2416  Z-score: 2597.1  bits: 489.2 E(32554): 2.4e-138
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB6 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA
              310       320       330       340       350       360

              370       
pF1KB6 SQATKDGKKDKKEEDKK
       :::::::::::::::::
CCDS99 SQATKDGKKDKKEEDKK
              370       

>>CCDS81375.1 PSMD4 gene_id:5710|Hs108|chr1               (380 aa)
 initn: 1633 init1: 1633 opt: 2400  Z-score: 2579.9  bits: 486.1 E(32554): 2.2e-137
Smith-Waterman score: 2400; 99.2% identity (99.2% similar) in 380 aa overlap (1-377:1-380)

               10        20        30        40        50        60
pF1KB6 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
              190       200       210       220       230       240

              250          260       270       280       290       
pF1KB6 ASAAEAGIATTGTE---DSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQG
       ::::::::::::::   :::::::::::::::::::::::::::::::::::::::::::
CCDS81 ASAAEAGIATTGTEGERDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQG
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KB6 AEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMG
              310       320       330       340       350       360

       360       370       
pF1KB6 SLASQATKDGKKDKKEEDKK
       ::::::::::::::::::::
CCDS81 SLASQATKDGKKDKKEEDKK
              370       380




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:03:03 2016 done: Sat Nov  5 11:03:03 2016
 Total Scan time:  2.300 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]