FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6603, 408 aa
  1>>>pF1KB6603 408 - 408 aa - 408 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1407+/-0.00103; mu= 9.7768+/- 0.062
 mean_var=132.6552+/-26.434, 0's: 0 Z-trim(108.5): 26  B-trim: 84 in 2/50
 Lambda= 0.111356
 statistics sampled from 10261 (10280) to 10261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.316), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS2237.1 SSB gene_id:6741|Hs108|chr2             ( 408) 2674 441.0 9.8e-124


>>CCDS2237.1 SSB gene_id:6741|Hs108|chr2                  (408 aa)
 initn: 2674 init1: 2674 opt: 2674  Z-score: 2334.9  bits: 441.0 E(32554): 9.8e-124
Smith-Waterman score: 2674; 100.0% identity (100.0% similar) in 408 aa overlap (1-408:1-408)

               10        20        30        40        50        60
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 VTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGK
              310       320       330       340       350       360

              370       380       390       400        
pF1KB6 KTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ
              370       380       390       400        




408 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:31:24 2016 done: Sat Nov  5 13:31:24 2016
 Total Scan time:  3.090 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]