Result of FASTA (ccds) for
pF1KB6605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6605, 393 aa
1>>>pF1KB6605 393 - 393 aa - 393 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1497+/-0.000835; mu= 11.4355+/- 0.050
mean_var=167.8376+/-35.047, 0's: 0 Z-trim(113.9): 17 B-trim: 957 in 2/49
Lambda= 0.098999
statistics sampled from 14512 (14526) to 14512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.446), width: 16
Scan time: 3.230
The best scores are: opt bits E(32554)
CCDS30747.1 SERBP1 gene_id:26135|Hs108|chr1 ( 393) 2706 398.0 7.9e-111
CCDS639.1 SERBP1 gene_id:26135|Hs108|chr1 ( 387) 2643 389.0 4e-108
CCDS30746.1 SERBP1 gene_id:26135|Hs108|chr1 ( 408) 1636 245.2 8.2e-65
CCDS30748.1 SERBP1 gene_id:26135|Hs108|chr1 ( 402) 1616 242.3 5.8e-64
CCDS6719.1 HABP4 gene_id:22927|Hs108|chr9 ( 413) 919 142.8 5.5e-34
>>CCDS30747.1 SERBP1 gene_id:26135|Hs108|chr1 (393 aa)
initn: 2706 init1: 2706 opt: 2706 Z-score: 2103.2 bits: 398.0 E(32554): 7.9e-111
Smith-Waterman score: 2706; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:1-393)
10 20 30 40 50 60
pF1KB6 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG
310 320 330 340 350 360
370 380 390
pF1KB6 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
:::::::::::::::::::::::::::::::::
CCDS30 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
370 380 390
>>CCDS639.1 SERBP1 gene_id:26135|Hs108|chr1 (387 aa)
initn: 1678 init1: 1402 opt: 2643 Z-score: 2054.7 bits: 389.0 E(32554): 4e-108
Smith-Waterman score: 2643; 98.5% identity (98.5% similar) in 393 aa overlap (1-393:1-387)
10 20 30 40 50 60
pF1KB6 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT
:::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS63 RGDGFDSRGKREFDRHSGSDRS------GLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT
190 200 210 220 230
250 260 270 280 290 300
pF1KB6 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG
300 310 320 330 340 350
370 380 390
pF1KB6 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
:::::::::::::::::::::::::::::::::
CCDS63 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
360 370 380
>>CCDS30746.1 SERBP1 gene_id:26135|Hs108|chr1 (408 aa)
initn: 1952 init1: 1604 opt: 1636 Z-score: 1277.1 bits: 245.2 E(32554): 8.2e-65
Smith-Waterman score: 2666; 96.3% identity (96.3% similar) in 408 aa overlap (1-393:1-408)
10 20 30 40 50 60
pF1KB6 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT--------
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
190 200 210 220 230 240
240 250 260 270 280
pF1KB6 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
310 320 330 340 350 360
350 360 370 380 390
pF1KB6 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
370 380 390 400
>>CCDS30748.1 SERBP1 gene_id:26135|Hs108|chr1 (402 aa)
initn: 1750 init1: 1402 opt: 1616 Z-score: 1261.7 bits: 242.3 E(32554): 5.8e-64
Smith-Waterman score: 2603; 94.9% identity (94.9% similar) in 408 aa overlap (1-393:1-402)
10 20 30 40 50 60
pF1KB6 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT--------
:::::::::::::::::::::: ::::::::::::::::::::::::
CCDS30 RGDGFDSRGKREFDRHSGSDRS------GLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
190 200 210 220 230
240 250 260 270 280
pF1KB6 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB6 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
300 310 320 330 340 350
350 360 370 380 390
pF1KB6 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
360 370 380 390 400
>>CCDS6719.1 HABP4 gene_id:22927|Hs108|chr9 (413 aa)
initn: 593 init1: 190 opt: 919 Z-score: 723.6 bits: 142.8 E(32554): 5.5e-34
Smith-Waterman score: 919; 42.8% identity (64.1% similar) in 418 aa overlap (5-393:16-413)
10 20 30 40
pF1KB6 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
.::.:::::.::: ::.:::::::..:. :: ....
CCDS67 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
10 20 30 40 50 60
50 60 70 80 90
pF1KB6 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
:...:.: :..: : :... :: :.::::.::. :: :. .. .:
CCDS67 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
.:. : .:. :: .:: .... . .: ::: :: : .: . . .: ..
CCDS67 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
120 130 140 150 160 170
160 170 180 190 200
pF1KB6 PII----DRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHY
: :::.::::: : ::::: : : :.::.::::::.:..:.:. .
CCDS67 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA----
180 190 200 210 220
210 220 230 240 250 260
pF1KB6 SGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHH--PVADTENKENEVEEV
.. ::. :: : ..::. :: .:.. . :: :: . : .. : :.:
CCDS67 --VRTEDNMGGCGVRTWGSGKDT-SDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVE
230 240 250 260 270 280
270 280 290 300 310 320
pF1KB6 KEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVM
.: .:::::::: .:.. : : :::::::. . .:. :.:::: .. ..:.
CCDS67 EETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVP---SKAVVIHKSKYRDDMVKDDYE
290 300 310 320 330 340
330 340 350 360 370 380
pF1KB6 D--HHFRKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-NRGSRTDKSSAS-A
: : :::::::::::::::::.: :::::.::: :::::: : : : :.. . :
CCDS67 DDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVA
350 360 370 380 390 400
390
pF1KB6 PDVDDPEAFPALA
:. :::: ::::.
CCDS67 PNPDDPEDFPALS
410
393 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:32:28 2016 done: Sat Nov 5 11:32:29 2016
Total Scan time: 3.230 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]