FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6612, 432 aa
  1>>>pF1KB6612 432 - 432 aa - 432 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4256+/-0.000747; mu= 7.9659+/- 0.045
 mean_var=117.9489+/-23.132, 0's: 0 Z-trim(112.2): 17  B-trim: 0 in 0/52
 Lambda= 0.118094
 statistics sampled from 13020 (13030) to 13020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.4), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS6227.1 PAG1 gene_id:55824|Hs108|chr8           ( 432) 2828 492.4 3.5e-139


>>CCDS6227.1 PAG1 gene_id:55824|Hs108|chr8                (432 aa)
 initn: 2828 init1: 2828 opt: 2828  Z-score: 2612.3  bits: 492.4 E(32554): 3.5e-139
Smith-Waterman score: 2828; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)

               10        20        30        40        50        60
pF1KB6 MGPAGSLLGSGQMQITLWGSLAAVAIFFVITFLIFLCSSCDREKKPRQHSGDHENLMNVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MGPAGSLLGSGQMQITLWGSLAAVAIFFVITFLIFLCSSCDREKKPRQHSGDHENLMNVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 STGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMVEDCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 STGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMVEDCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 NVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 NVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 SREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 TVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDYESI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDYESI
              370       380       390       400       410       420

              430  
pF1KB6 SDLQQGRDITRL
       ::::::::::::
CCDS62 SDLQQGRDITRL
              430  




432 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:05:41 2016 done: Sat Nov  5 11:05:42 2016
 Total Scan time:  2.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]