FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6615, 412 aa
  1>>>pF1KB6615 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0043+/-0.000665; mu= 19.9790+/- 0.040
 mean_var=75.1229+/-15.541, 0's: 0 Z-trim(111.4): 12  B-trim: 0 in 0/50
 Lambda= 0.147975
 statistics sampled from 12325 (12330) to 12325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.379), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS6431.1 MFSD3 gene_id:113655|Hs108|chr8         ( 412) 2693 583.8 9.9e-167


>>CCDS6431.1 MFSD3 gene_id:113655|Hs108|chr8              (412 aa)
 initn: 2693 init1: 2693 opt: 2693  Z-score: 3106.8  bits: 583.8 E(32554): 9.9e-167
Smith-Waterman score: 2693; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MRGKLLPLAGLYLVQGLPYGLQSGLLPVLLRAGGLSLTRVGLAKVLYAPWLLKLAWAPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MRGKLLPLAGLYLVQGLPYGLQSGLLPVLLRAGGLSLTRVGLAKVLYAPWLLKLAWAPLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DAQGSARAWVTRSTAGLGLVCGLLAGLPPPGAGQAGLPAAVAGLLLLLNLGAAMQDVALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DAQGSARAWVTRSTAGLGLVCGLLAGLPPPGAGQAGLPAAVAGLLLLLNLGAAMQDVALD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ALAVQLLEPAELGPGNTVQVVAYKLGAALAGGALLALLPTFSWPQLFLLLAATYWLAAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ALAVQLLEPAELGPGNTVQVVAYKLGAALAGGALLALLPTFSWPQLFLLLAATYWLAAAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AWAAPALRRLPQQPPSEQRPHTAHLLRDVLAVPGTVWTAGFVLTYKLGEQGASSLFPLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AWAAPALRRLPQQPPSEQRPHTAHLLRDVLAVPGTVWTAGFVLTYKLGEQGASSLFPLLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LDHGVSAPELGLWNGVGAVVCSIAGSSLGGTLLAKHWKLLPLLRSVLRFRLGGLACQTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LDHGVSAPELGLWNGVGAVVCSIAGSSLGGTLLAKHWKLLPLLRSVLRFRLGGLACQTAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 VFHLDTLGASMDAGTILRGSALLSLCLQHFLGGLVTTVTFTGMMRCSQLAPRALQATHYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VFHLDTLGASMDAGTILRGSALLSLCLQHFLGGLVTTVTFTGMMRCSQLAPRALQATHYS
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 LLATLELLGKLLLGTLAGGLADGLGPHPCFLLLLILSAFPVLYLDLAPSTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LLATLELLGKLLLGTLAGGLADGLGPHPCFLLLLILSAFPVLYLDLAPSTFL
              370       380       390       400       410  




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:06:52 2016 done: Sat Nov  5 11:06:52 2016
 Total Scan time:  3.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]