Result of FASTA (ccds) for
pF1KB6632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6632, 440 aa
1>>>pF1KB6632 440 - 440 aa - 440 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2202+/- 0.001; mu= -6.3230+/- 0.061
mean_var=410.8527+/-85.068, 0's: 0 Z-trim(116.5): 7 B-trim: 182 in 1/53
Lambda= 0.063275
statistics sampled from 17108 (17115) to 17108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.526), width: 16
Scan time: 4.030
The best scores are: opt bits E(32554)
CCDS2681.1 GORASP1 gene_id:64689|Hs108|chr3 ( 440) 2983 286.0 5.2e-77
CCDS63597.1 GORASP1 gene_id:64689|Hs108|chr3 ( 345) 2207 215.0 9.2e-56
CCDS63596.1 GORASP1 gene_id:64689|Hs108|chr3 ( 285) 1605 160.0 2.8e-39
CCDS33325.1 GORASP2 gene_id:26003|Hs108|chr2 ( 452) 1080 112.3 1e-24
>>CCDS2681.1 GORASP1 gene_id:64689|Hs108|chr3 (440 aa)
initn: 2983 init1: 2983 opt: 2983 Z-score: 1496.1 bits: 286.0 E(32554): 5.2e-77
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)
10 20 30 40 50 60
pF1KB6 MGLGVSAEQPAGGAEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MGLGVSAEQPAGGAEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 ANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSPAALAGLRPYTDYVVGSDQILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SSPAALAGLRPYTDYVVGSDQILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NAAWGGEGSLGCGIGYGYLHRIPTQPPSYHKKPPGTPPPSALPLGAPPPDALPPGPTPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 NAAWGGEGSLGCGIGYGYLHRIPTQPPSYHKKPPGTPPPSALPLGAPPPDALPPGPTPED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 RVMDPGFLDVSGISLLDNSNASVWPSLPSSTELTTTAVSTSGPEDICSSSSSHERGGEAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RVMDPGFLDVSGISLLDNSNASVWPSLPSSTELTTTAVSTSGPEDICSSSSSHERGGEAT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 WSGSEFEVSFLDSPGAQAQADHLPQLTLPDSLTSAASPEDGLSAELLEAQAEEEPASTEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 WSGSEFEVSFLDSPGAQAQADHLPQLTLPDSLTSAASPEDGLSAELLEAQAEEEPASTEG
370 380 390 400 410 420
430 440
pF1KB6 LDTGTEAEGLDSQAQISTTE
::::::::::::::::::::
CCDS26 LDTGTEAEGLDSQAQISTTE
430 440
>>CCDS63597.1 GORASP1 gene_id:64689|Hs108|chr3 (345 aa)
initn: 2207 init1: 2207 opt: 2207 Z-score: 1114.6 bits: 215.0 E(32554): 9.2e-56
Smith-Waterman score: 2207; 100.0% identity (100.0% similar) in 324 aa overlap (117-440:22-345)
90 100 110 120 130 140
pF1KB6 SNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEPSSPAALAGLRPYTDYVVGSDQILQES
::::::::::::::::::::::::::::::
CCDS63 MGLGVSAEQPAGGAEGFHLHGDVEPSSPAALAGLRPYTDYVVGSDQILQES
10 20 30 40 50
150 160 170 180 190 200
pF1KB6 EDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTPNAAWGGEGSLGCGIGYGYLHRIPTQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTPNAAWGGEGSLGCGIGYGYLHRIPTQP
60 70 80 90 100 110
210 220 230 240 250 260
pF1KB6 PSYHKKPPGTPPPSALPLGAPPPDALPPGPTPEDSPSLETGSRQSDYMEALLQAPGSSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PSYHKKPPGTPPPSALPLGAPPPDALPPGPTPEDSPSLETGSRQSDYMEALLQAPGSSME
120 130 140 150 160 170
270 280 290 300 310 320
pF1KB6 DPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPS
180 190 200 210 220 230
330 340 350 360 370 380
pF1KB6 LPSSTELTTTAVSTSGPEDICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LPSSTELTTTAVSTSGPEDICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQL
240 250 260 270 280 290
390 400 410 420 430 440
pF1KB6 TLPDSLTSAASPEDGLSAELLEAQAEEEPASTEGLDTGTEAEGLDSQAQISTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TLPDSLTSAASPEDGLSAELLEAQAEEEPASTEGLDTGTEAEGLDSQAQISTTE
300 310 320 330 340
>>CCDS63596.1 GORASP1 gene_id:64689|Hs108|chr3 (285 aa)
initn: 1739 init1: 1604 opt: 1605 Z-score: 818.7 bits: 160.0 E(32554): 2.8e-39
Smith-Waterman score: 1661; 81.5% identity (81.5% similar) in 324 aa overlap (117-440:22-285)
90 100 110 120 130 140
pF1KB6 SNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEPSSPAALAGLRPYTDYVVGSDQILQES
:::::::::::::::::::::::::::::
CCDS63 MGLGVSAEQPAGGAEGFHLHGDVEPSSPAALAGLRPYTDYVVGSDQILQE-
10 20 30 40 50
150 160 170 180 190 200
pF1KB6 EDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTPNAAWGGEGSLGCGIGYGYLHRIPTQP
:
CCDS63 -----------------------------------------------------------P
210 220 230 240 250 260
pF1KB6 PSYHKKPPGTPPPSALPLGAPPPDALPPGPTPEDSPSLETGSRQSDYMEALLQAPGSSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PSYHKKPPGTPPPSALPLGAPPPDALPPGPTPEDSPSLETGSRQSDYMEALLQAPGSSME
60 70 80 90 100 110
270 280 290 300 310 320
pF1KB6 DPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPS
120 130 140 150 160 170
330 340 350 360 370 380
pF1KB6 LPSSTELTTTAVSTSGPEDICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LPSSTELTTTAVSTSGPEDICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQL
180 190 200 210 220 230
390 400 410 420 430 440
pF1KB6 TLPDSLTSAASPEDGLSAELLEAQAEEEPASTEGLDTGTEAEGLDSQAQISTTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TLPDSLTSAASPEDGLSAELLEAQAEEEPASTEGLDTGTEAEGLDSQAQISTTE
240 250 260 270 280
>>CCDS33325.1 GORASP2 gene_id:26003|Hs108|chr2 (452 aa)
initn: 1124 init1: 1038 opt: 1080 Z-score: 557.1 bits: 112.3 E(32554): 1e-24
Smith-Waterman score: 1100; 45.8% identity (65.7% similar) in 432 aa overlap (1-398:1-422)
10 20 30 40 50 60
pF1KB6 MGLGVSAEQPAGGAEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK
:: . :.: :.::.::.:. ::::::...:::::.::::..:. :::::.::::: :::
CCDS33 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEP
::::::::. ... ::...::. :.:::.::::::::.:.::::: :.:.:::::.::
CCDS33 ANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSPAALAGLRPYTDYVVGSDQILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTP
.::::::::::..::..:.: ...::::.:.:::.::.:::::.:::. .:.:::: .::
CCDS33 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP
130 140 150 160 170 180
190 200 210 220
pF1KB6 NAAWGGEGSLGCGIGYGYLHRIPTQPPSYHKKP--PGT---PPPSALPLG--------AP
:.::::::::::::::::::::::.: :: :: : . : : .
CCDS33 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMAGTPITPLKDGFTEVQLSSVN
190 200 210 220 230 240
230 240 250 260 270
pF1KB6 PPDALPPGPTP-EDSPSLETGSRQSDYMEALLQA--PGSSMEDP--------LPGPGSPS
::. ::: : :.: . . : . ..:.. : . : .: : .:.
CCDS33 PPSLSPPGTTGIEQSLTGLSISSTPPAVSSVLSTGVPTVPLLPPQVNQSLTSVP-PMNPA
250 260 270 280 290
280 290 300 310 320 330
pF1KB6 HSAPD----PDGLPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPSLPSSTE
. : : :::.. . :. : : ..: :: :. : : . ::.: .
CCDS33 TTLPGLMPLPAGLPNLPNLNLNLPAP--HIM-PGV----GLPELVNPGLPPLPSMPPRN-
300 310 320 330 340 350
340 350 360 370 380
pF1KB6 LTTTAVSTSGPEDICSS------SSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQL
: : : .. : ::: .:: : . : . :.:: .:
CCDS33 LPGIA-PLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAPSDPATTTAKADAASSL
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB6 TLPDSLTSAASPEDGLSAELLEAQAEEEPASTEGLDTGTEAEGLDSQAQISTTE
:. . .: .:
CCDS33 TVDVTPPTAKAPTTVEDRVGDSTPVSEKPVSAAVDANASESP
420 430 440 450
440 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:37:57 2016 done: Sat Nov 5 11:37:57 2016
Total Scan time: 4.030 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]