Result of FASTA (omim) for
pF1KB6647
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6647, 404 aa
1>>>pF1KB6647 404 - 404 aa - 404 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3666+/-0.000345; mu= 4.3099+/- 0.021
mean_var=237.3936+/-48.965, 0's: 0 Z-trim(122.6): 88 B-trim: 847 in 2/59
Lambda= 0.083241
statistics sampled from 40890 (40996) to 40890 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.481), width: 16
Scan time: 8.460
The best scores are: opt bits E(85289)
NP_001127 (OMIM: 600214) advanced glycosylation en ( 404) 2756 343.6 5e-94
NP_001193861 (OMIM: 600214) advanced glycosylation ( 390) 2306 289.6 9.1e-78
NP_001193895 (OMIM: 600214) advanced glycosylation ( 347) 2289 287.5 3.4e-77
NP_001193869 (OMIM: 600214) advanced glycosylation ( 347) 2289 287.5 3.4e-77
NP_001193865 (OMIM: 600214) advanced glycosylation ( 355) 1923 243.5 6e-64
NP_001193883 (OMIM: 600214) advanced glycosylation ( 325) 1896 240.3 5.3e-63
NP_001193858 (OMIM: 600214) advanced glycosylation ( 420) 1808 229.8 9.6e-60
NP_751947 (OMIM: 600214) advanced glycosylation en ( 342) 1446 186.2 1e-46
NP_001193863 (OMIM: 600214) advanced glycosylation ( 363) 1341 173.7 6.6e-43
XP_016865817 (OMIM: 600214) PREDICTED: advanced gl ( 372) 958 127.7 4.7e-29
NP_001230210 (OMIM: 601662) CD166 antigen isoform ( 555) 307 49.7 2.1e-05
NP_001230209 (OMIM: 601662) CD166 antigen isoform ( 570) 307 49.7 2.2e-05
NP_001618 (OMIM: 601662) CD166 antigen isoform 1 p ( 583) 307 49.7 2.2e-05
XP_016873251 (OMIM: 155735) PREDICTED: cell surfac ( 583) 285 47.0 0.00014
XP_016873250 (OMIM: 155735) PREDICTED: cell surfac ( 604) 285 47.1 0.00014
XP_016873249 (OMIM: 155735) PREDICTED: cell surfac ( 614) 285 47.1 0.00014
XP_016873248 (OMIM: 155735) PREDICTED: cell surfac ( 625) 285 47.1 0.00015
NP_006491 (OMIM: 155735) cell surface glycoprotein ( 646) 285 47.1 0.00015
>>NP_001127 (OMIM: 600214) advanced glycosylation end pr (404 aa)
initn: 2756 init1: 2756 opt: 2756 Z-score: 1809.1 bits: 343.6 E(85289): 5e-94
Smith-Waterman score: 2756; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
310 320 330 340 350 360
370 380 390 400
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
370 380 390 400
>>NP_001193861 (OMIM: 600214) advanced glycosylation end (390 aa)
initn: 2300 init1: 2300 opt: 2306 Z-score: 1517.2 bits: 289.6 E(85289): 9.1e-78
Smith-Waterman score: 2622; 96.5% identity (96.5% similar) in 404 aa overlap (1-404:1-390)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKL-------
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------GGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
290 300 310 320 330 340
370 380 390 400
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
350 360 370 380 390
>>NP_001193895 (OMIM: 600214) advanced glycosylation end (347 aa)
initn: 2289 init1: 2289 opt: 2289 Z-score: 1506.8 bits: 287.5 E(85289): 3.4e-77
Smith-Waterman score: 2289; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
:::::::::::::::::::::::::::::::
NP_001 CVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSPQHM
310 320 330 340
370 380 390 400
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
>>NP_001193869 (OMIM: 600214) advanced glycosylation end (347 aa)
initn: 2289 init1: 2289 opt: 2289 Z-score: 1506.8 bits: 287.5 E(85289): 3.4e-77
Smith-Waterman score: 2289; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
:::::::::::::::::::::::::::::::
NP_001 CVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSPQHM
310 320 330 340
370 380 390 400
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
>>NP_001193865 (OMIM: 600214) advanced glycosylation end (355 aa)
initn: 1958 init1: 1921 opt: 1923 Z-score: 1269.1 bits: 243.5 E(85289): 6e-64
Smith-Waterman score: 1923; 87.4% identity (92.9% similar) in 326 aa overlap (1-326:1-323)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
:::::::::::::::::::::::::::::::::::. : . .: ::. ... :
NP_001 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGLRTREPTAVWPPIPATGPR-KAVLS
250 260 270 280 290
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
:. ::. .... ..:. :..
NP_001 --ASASSNQARRGQLQVRGLIKSGKQKIAPNTCDWGDGQQERNGRPQKTRRKRRSVQN
300 310 320 330 340 350
>>NP_001193883 (OMIM: 600214) advanced glycosylation end (325 aa)
initn: 1896 init1: 1896 opt: 1896 Z-score: 1252.1 bits: 240.3 E(85289): 5.3e-63
Smith-Waterman score: 1896; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::
NP_001 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDNQARRGQLQVRGLIKSGKQKIAPNTC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
NP_001 DWGDGQQERNGRPQKTRRKRRSVQN
310 320
>>NP_001193858 (OMIM: 600214) advanced glycosylation end (420 aa)
initn: 1804 init1: 1804 opt: 1808 Z-score: 1193.6 bits: 229.8 E(85289): 9.6e-60
Smith-Waterman score: 2714; 96.2% identity (96.2% similar) in 420 aa overlap (1-404:1-420)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160
pF1KB6 PGKPEIVDSASELTAGVPNKV----------------GTCVSEGSYPAGTLSWHLDGKPL
::::::::::::::::::::: :::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVVEESRRSRKRPCEQEVGTCVSEGSYPAGTLSWHLDGKPL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
370 380 390 400 410 420
>>NP_751947 (OMIM: 600214) advanced glycosylation end pr (342 aa)
initn: 1464 init1: 1440 opt: 1446 Z-score: 959.7 bits: 186.2 E(85289): 1e-46
Smith-Waterman score: 1762; 94.9% identity (94.9% similar) in 274 aa overlap (1-274:1-260)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKL-------
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 -------GGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::
NP_751 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDVSDLERGAGRTRRGGANCRLCGRIRA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
NP_751 GNSSPGPGDPGRPGDSRPAHWGHLVAKAATPRRGEEGPRKPGGRGGACRTESVGGT
290 300 310 320 330 340
>>NP_001193863 (OMIM: 600214) advanced glycosylation end (363 aa)
initn: 1337 init1: 1337 opt: 1341 Z-score: 891.3 bits: 173.7 E(85289): 6.6e-43
Smith-Waterman score: 2247; 95.4% identity (95.4% similar) in 347 aa overlap (1-331:1-347)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160
pF1KB6 PGKPEIVDSASELTAGVPNKV----------------GTCVSEGSYPAGTLSWHLDGKPL
::::::::::::::::::::: :::::::::::::::::::::::
NP_001 PGKPEIVDSASELTAGVPNKVVEESRRSRKRPCEQEVGTCVSEGSYPAGTLSWHLDGKPL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSP
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
NP_001 QHM
>>XP_016865817 (OMIM: 600214) PREDICTED: advanced glycos (372 aa)
initn: 987 init1: 958 opt: 958 Z-score: 642.5 bits: 127.7 E(85289): 4.7e-29
Smith-Waterman score: 1854; 94.5% identity (94.5% similar) in 290 aa overlap (1-274:32-321)
10 20 30
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARI
::::::::::::::::::::::::::::::
XP_016 GAGERVQAPPRAEATAGRGADRARTLEGSRMAAGTAVGAWVLVLSLWGAVVGAQNITARI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVG
70 80 90 100 110 120
100 110 120 130 140
pF1KB6 IQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKV---------
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVVEESRRSRK
130 140 150 160 170 180
150 160 170 180 190
pF1KB6 -------GTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPCEQEVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMV
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB6 TPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQLVVEPEGGAVAPGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQLVVEPEGGAVAPGGT
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB6 VTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESR
::::::::::::::::::::
XP_016 VTLTCEVPAQPSPQIHWMKDNQARRGQLQVRGLIKSGKQKIAPNTCDWGDGQQERNGRPQ
310 320 330 340 350 360
404 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:14:45 2016 done: Sat Nov 5 11:14:46 2016
Total Scan time: 8.460 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]