Result of FASTA (ccds) for
pF1KB6654
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6654, 389 aa
1>>>pF1KB6654 389 - 389 aa - 389 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0211+/-0.000976; mu= 12.8104+/- 0.058
mean_var=67.3729+/-13.150, 0's: 0 Z-trim(104.4): 17 B-trim: 0 in 0/51
Lambda= 0.156254
statistics sampled from 7880 (7887) to 7880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.242), width: 16
Scan time: 2.320
The best scores are: opt bits E(32554)
CCDS1669.1 RRM2 gene_id:6241|Hs108|chr2 ( 389) 2584 591.6 4e-169
CCDS54334.1 RRM2 gene_id:6241|Hs108|chr2 ( 449) 2584 591.6 4.6e-169
CCDS34932.1 RRM2B gene_id:50484|Hs108|chr8 ( 351) 1861 428.6 4.2e-120
CCDS55267.1 RRM2B gene_id:50484|Hs108|chr8 ( 299) 1662 383.7 1.2e-106
>>CCDS1669.1 RRM2 gene_id:6241|Hs108|chr2 (389 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 3149.8 bits: 591.6 E(32554): 4e-169
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)
10 20 30 40 50 60
pF1KB6 MLSLRVPLAPITDPQQLQLSPLKGLSLVDKENTPPALSGTRVLASKTARRIFQEPTEPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MLSLRVPLAPITDPQQLQLSPLKGLSLVDKENTPPALSGTRVLASKTARRIFQEPTEPKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 DTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN
310 320 330 340 350 360
370 380
pF1KB6 FFEKRVGEYQRMGVMSSPTENSFTLDADF
:::::::::::::::::::::::::::::
CCDS16 FFEKRVGEYQRMGVMSSPTENSFTLDADF
370 380
>>CCDS54334.1 RRM2 gene_id:6241|Hs108|chr2 (449 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 3148.8 bits: 591.6 E(32554): 4.6e-169
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:61-449)
10 20 30
pF1KB6 MLSLRVPLAPITDPQQLQLSPLKGLSLVDK
::::::::::::::::::::::::::::::
CCDS54 FKGCWSEGSPVHPVPAVLSWLLALLRCASTMLSLRVPLAPITDPQQLQLSPLKGLSLVDK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 ENTPPALSGTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENTPPALSGTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDI
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 WQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFS
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 LRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHC
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB6 DFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR
340 350 360 370 380 390
340 350 360 370 380
pF1KB6 LMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
400 410 420 430 440
>>CCDS34932.1 RRM2B gene_id:50484|Hs108|chr8 (351 aa)
initn: 1861 init1: 1861 opt: 1861 Z-score: 2269.7 bits: 428.6 E(32554): 4.2e-120
Smith-Waterman score: 1861; 83.8% identity (96.3% similar) in 321 aa overlap (69-389:31-351)
40 50 60 70 80 90
pF1KB6 GTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAE
.:::::.. ::::::::.: :::.:::.:.
CCDS34 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ
10 20 30 40 50 60
100 110 120 130 140 150
pF1KB6 ASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA
::::::::::::::. ::..:: .:.:::::.::::::::::::::::::::::::. ::
CCDS34 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA
70 80 90 100 110 120
160 170 180 190 200 210
pF1KB6 RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKE
:::::::: .::.:::::::::::::.:::.:::::::::::: ::::::::::::.:..
CCDS34 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK
130 140 150 160 170 180
220 230 240 250 260 270
pF1KB6 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK
.:.::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::.
CCDS34 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ
190 200 210 220 230 240
280 290 300 310 320 330
pF1KB6 HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS
.::.:::::::::::..::.:::::::::::: :::::: :::::::::::::..:::::
CCDS34 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS
250 260 270 280 290 300
340 350 360 370 380
pF1KB6 KVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
:::..:::::::::::::::::::::::.::::..::. :.: :::::::
CCDS34 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF
310 320 330 340 350
>>CCDS55267.1 RRM2B gene_id:50484|Hs108|chr8 (299 aa)
initn: 1662 init1: 1662 opt: 1662 Z-score: 2028.5 bits: 383.7 E(32554): 1.2e-106
Smith-Waterman score: 1662; 82.4% identity (94.9% similar) in 295 aa overlap (95-389:5-299)
70 80 90 100 110 120
pF1KB6 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEER
.. ::. .:::::::. ::..:: .:.
CCDS55 MGDPERPEAAGLDQDEVDLSKDLPHWNKLKADEK
10 20 30
130 140 150 160 170 180
pF1KB6 YFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYI
:::::.::::::::::::::::::::::::. :::::::::: .::.:::::::::::::
CCDS55 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB6 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF
.:::.:::::::::::: ::::::::::::.:...:.::::::::::::.:::::::.::
CCDS55 RDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIF
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB6 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFL
:::::::::::::::::::::::::::::::::..::.:::::::::::..::.::::::
CCDS55 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFL
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEK
:::::: :::::: :::::::::::::..::::::::..:::::::::::::::::::::
CCDS55 TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEK
220 230 240 250 260 270
370 380
pF1KB6 RVGEYQRMGVMSSPTENSFTLDADF
::.::::..::. :.: :::::::
CCDS55 RVSEYQRFAVMAETTDNVFTLDADF
280 290
389 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:32:37 2016 done: Sat Nov 5 07:32:38 2016
Total Scan time: 2.320 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]