FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6663, 424 aa
  1>>>pF1KB6663 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6471+/-0.00131; mu= -7.5711+/- 0.080
 mean_var=837.5636+/-173.982, 0's: 0 Z-trim(117.8): 148  B-trim: 174 in 1/54
 Lambda= 0.044316
 statistics sampled from 18412 (18558) to 18412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.57), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS72900.1 SF3B4 gene_id:10262|Hs108|chr1         ( 424) 3164 217.0 2.8e-56


>>CCDS72900.1 SF3B4 gene_id:10262|Hs108|chr1              (424 aa)
 initn: 3164 init1: 3164 opt: 3164  Z-score: 1123.8  bits: 217.0 E(32554): 2.8e-56
Smith-Waterman score: 3164; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KB6 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
              370       380       390       400       410       420

           
pF1KB6 PLPQ
       ::::
CCDS72 PLPQ
           




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:40:23 2016 done: Sat Nov  5 11:40:24 2016
 Total Scan time:  3.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]