FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6667, 425 aa
  1>>>pF1KB6667 425 - 425 aa - 425 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8513+/-0.000875; mu= 11.3109+/- 0.053
 mean_var=111.6794+/-21.877, 0's: 0 Z-trim(109.8): 11  B-trim: 214 in 1/52
 Lambda= 0.121363
 statistics sampled from 11123 (11129) to 11123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.342), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS2215.1 TANK gene_id:10010|Hs108|chr2           ( 425) 2860 511.4 6.8e-145
CCDS46436.1 TANK gene_id:10010|Hs108|chr2          ( 119)  706 133.9 8.1e-32


>>CCDS2215.1 TANK gene_id:10010|Hs108|chr2                (425 aa)
 initn: 2860 init1: 2860 opt: 2860  Z-score: 2714.8  bits: 511.4 E(32554): 6.8e-145
Smith-Waterman score: 2860; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KB6 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVRRQEVSSPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVRRQEVSSPRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ETSARSLGSPLLHERGNIEKTFWDLKEEFHKICMLAKAQKDHLSKLNIPDTATETQCSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 ETSARSLGSPLLHERGNIEKTFWDLKEEFHKICMLAKAQKDHLSKLNIPDTATETQCSVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IQCTDKTDKQEALFKPQAKDDINRGAPSITSVTPRGLCRDEEDTSFESLSKFNVKFPPMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 IQCTDKTDKQEALFKPQAKDDINRGAPSITSVTPRGLCRDEEDTSFESLSKFNVKFPPMD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 NDSTFLHSTPERPGILSPATSEAVCQEKFNMEFRDNPGNFVKTEETLFEIQGIDPIASAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NDSTFLHSTPERPGILSPATSEAVCQEKFNMEFRDNPGNFVKTEETLFEIQGIDPIASAI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 QNLKTTDKTKPSNLVNTCIRTTLDRAACLPPGDHNALYVNSFPLLDPSDAPFPSLDSPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QNLKTTDKTKPSNLVNTCIRTTLDRAACLPPGDHNALYVNSFPLLDPSDAPFPSLDSPGK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 AIRGPQQPIWKPFPNQDSDSVVLSGTDSELHIPRVCEFCQAVFPPSITSRGDFLRHLNSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 AIRGPQQPIWKPFPNQDSDSVVLSGTDSELHIPRVCEFCQAVFPPSITSRGDFLRHLNSH
              370       380       390       400       410       420

            
pF1KB6 FNGET
       :::::
CCDS22 FNGET
            

>>CCDS46436.1 TANK gene_id:10010|Hs108|chr2               (119 aa)
 initn: 706 init1: 706 opt: 706  Z-score: 684.7  bits: 133.9 E(32554): 8.1e-32
Smith-Waterman score: 706; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KB6 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQQEQLSLQQTIIDKLKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVRRQEVSSPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS46 QLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGIAREKLPKVDIASAESSI 
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB6 ETSARSLGSPLLHERGNIEKTFWDLKEEFHKICMLAKAQKDHLSKLNIPDTATETQCSVP




425 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:07:52 2016 done: Sat Nov  5 20:07:52 2016
 Total Scan time:  2.990 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]