FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6669, 425 aa
  1>>>pF1KB6669 425 - 425 aa - 425 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2129+/-0.00099; mu= 12.4785+/- 0.059
 mean_var=78.8982+/-15.658, 0's: 0 Z-trim(105.2): 23  B-trim: 0 in 0/50
 Lambda= 0.144391
 statistics sampled from 8271 (8287) to 8271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.255), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS9355.1 SOHLH2 gene_id:54937|Hs108|chr13        ( 425) 2779 588.7 3.5e-168
CCDS55896.1 SOHLH2 gene_id:100526761|Hs108|chr13   ( 502) 2668 565.6 3.7e-161
CCDS61309.1 SOHLH2 gene_id:54937|Hs108|chr13       ( 225) 1374 296.0 2.5e-80


>>CCDS9355.1 SOHLH2 gene_id:54937|Hs108|chr13             (425 aa)
 initn: 2779 init1: 2779 opt: 2779  Z-score: 3132.9  bits: 588.7 E(32554): 3.5e-168
Smith-Waterman score: 2779; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KB6 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 SLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQ
              370       380       390       400       410       420

            
pF1KB6 QFWAY
       :::::
CCDS93 QFWAY
            

>>CCDS55896.1 SOHLH2 gene_id:100526761|Hs108|chr13        (502 aa)
 initn: 2668 init1: 2668 opt: 2668  Z-score: 3006.8  bits: 565.6 E(32554): 3.7e-161
Smith-Waterman score: 2668; 99.8% identity (100.0% similar) in 410 aa overlap (16-425:93-502)

                              10        20        30        40     
pF1KB6                MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAE
                                     .:::::::::::::::::::::::::::::
CCDS55 VSKRQQVDQLPRMQENLVKTLLLKEELDPLKAKIDILLVGDVTVGYLADTVQKLFANIAE
             70        80        90       100       110       120  

          50        60        70        80        90       100     
pF1KB6 VTITISDTKEAAALLDDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTITISDTKEAAALLDDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPE
            130       140       150       160       170       180  

         110       120       130       140       150       160     
pF1KB6 NFKGCISGHGMDIALTEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NFKGCISGHGMDIALTEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSE
            190       200       210       220       230       240  

         170       180       190       200       210       220     
pF1KB6 HLGYFPTDLFACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HLGYFPTDLFACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLR
            250       260       270       280       290       300  

         230       240       250       260       270       280     
pF1KB6 TLLPYVKGRKNDAASVLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLLPYVKGRKNDAASVLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELS
            310       320       330       340       350       360  

         290       300       310       320       330       340     
pF1KB6 LPGTVMAQRENSVMSTYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPGTVMAQRENSVMSTYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIG
            370       380       390       400       410       420  

         350       360       370       380       390       400     
pF1KB6 DPYKTHISSAALSLNSLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPYKTHISSAALSLNSLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCT
            430       440       450       460       470       480  

         410       420     
pF1KB6 SGLGQTCTTHPNCLQQFWAY
       ::::::::::::::::::::
CCDS55 SGLGQTCTTHPNCLQQFWAY
            490       500  

>>CCDS61309.1 SOHLH2 gene_id:54937|Hs108|chr13            (225 aa)
 initn: 1374 init1: 1374 opt: 1374  Z-score: 1555.6  bits: 296.0 E(32554): 2.5e-80
Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB6 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAAS
       ::::::::::::::::::::::::::::::::::                          
CCDS61 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRLYRKHSSFCFW               
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB6 VLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMS




425 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:19:03 2016 done: Sat Nov  5 11:19:04 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]