FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6675, 427 aa
  1>>>pF1KB6675 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2433+/-0.000816; mu= 15.1073+/- 0.050
 mean_var=142.2425+/-26.916, 0's: 0 Z-trim(113.3): 60  B-trim: 9 in 1/50
 Lambda= 0.107537
 statistics sampled from 13920 (13978) to 13920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.429), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS11549.1 NGFR gene_id:4804|Hs108|chr17          ( 427) 2962 470.9 1.1e-132


>>CCDS11549.1 NGFR gene_id:4804|Hs108|chr17               (427 aa)
 initn: 2962 init1: 2962 opt: 2962  Z-score: 2495.8  bits: 470.9 E(32554): 1.1e-132
Smith-Waterman score: 2962; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MGAGATGRAMDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGAGATGRAMDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QTVCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QTVCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLREC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLREC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TRWADAECEEIPGRWITRSTPPEGSDSTAPSTQEPEAPPEQDLIASTVAGVVTTVMGSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TRWADAECEEIPGRWITRSTPPEGSDSTAPSTQEPEAPPEQDLIASTVAGVVTTVMGSSQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVVTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PVVTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 LHSDSGISVDSQSLHDQQPHTQTASGQALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LHSDSGISVDSQSLHDQQPHTQTASGQALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 HLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSE
              370       380       390       400       410       420

              
pF1KB6 STATSPV
       :::::::
CCDS11 STATSPV
              




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:20:31 2016 done: Mon Nov  7 20:20:31 2016
 Total Scan time:  2.220 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]