FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6676, 454 aa
  1>>>pF1KB6676 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1310+/-0.000977; mu= 1.3750+/- 0.059
 mean_var=216.1457+/-44.638, 0's: 0 Z-trim(112.7): 41  B-trim: 0 in 0/51
 Lambda= 0.087237
 statistics sampled from 13357 (13393) to 13357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.411), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS6009.1 SH2D4A gene_id:63898|Hs108|chr8         ( 454) 3021 392.8 3.9e-109
CCDS55206.1 SH2D4A gene_id:63898|Hs108|chr8        ( 409) 2643 345.2 7.5e-95


>>CCDS6009.1 SH2D4A gene_id:63898|Hs108|chr8              (454 aa)
 initn: 3021 init1: 3021 opt: 3021  Z-score: 2072.8  bits: 392.8 E(32554): 3.9e-109
Smith-Waterman score: 3021; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KB6 MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQIRRWKEREAAMERKESLPVKPRPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQIRRWKEREAAMERKESLPVKPRPKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ENGKSVHWKLGADKEVWVWVMGEHHLDKPYDVLCNEIIAERARLKAEQEAEEPRKTHSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ENGKSVHWKLGADKEVWVWVMGEHHLDKPYDVLCNEIIAERARLKAEQEAEEPRKTHSEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FTNSLKTKSQYHDLQAPDNQQTKDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FTNSLKTKSQYHDLQAPDNQQTKDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QQMLADSINRMKAYAFHQKKESMKKKQDEEINQIEEERTKQICKSWKEDSEWQASLRKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QQMLADSINRMKAYAFHQKKESMKKKQDEEINQIEEERTKQICKSWKEDSEWQASLRKSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AADEKRRSLAKQAREDYKRLSLGAQKGRGGERLQSPLRVPQKPERPPLPPKPQFLNSGAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AADEKRRSLAKQAREDYKRLSLGAQKGRGGERLQSPLRVPQKPERPPLPPKPQFLNSGAY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 PQKPLRNQGVVRTLSSSAQEDIIRWFKEEQLPLRAGYQKTSDTIAPWFHGILTLKKANEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PQKPLRNQGVVRTLSSSAQEDIIRWFKEEQLPLRAGYQKTSDTIAPWFHGILTLKKANEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LLSTGMPGSFLIRVSERIKGYALSYLSEDGCKHFLIDASADAYSFLGVDQLQHATLADLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LLSTGMPGSFLIRVSERIKGYALSYLSEDGCKHFLIDASADAYSFLGVDQLQHATLADLV
              370       380       390       400       410       420

              430       440       450    
pF1KB6 EYHKEEPITSLGKELLLYPCGQQDQLPDYLELFE
       ::::::::::::::::::::::::::::::::::
CCDS60 EYHKEEPITSLGKELLLYPCGQQDQLPDYLELFE
              430       440       450    

>>CCDS55206.1 SH2D4A gene_id:63898|Hs108|chr8             (409 aa)
 initn: 2639 init1: 2639 opt: 2643  Z-score: 1816.4  bits: 345.2 E(32554): 7.5e-95
Smith-Waterman score: 2643; 98.5% identity (98.8% similar) in 402 aa overlap (53-454:8-409)

             30        40        50        60        70        80  
pF1KB6 QKQILFFKMREEQIRRWKEREAAMERKESLPVKPRPKKENGKSVHWKLGADKEVWVWVMG
                                     :    :. ::::::::::::::::::::::
CCDS55                        MWRVIEPPCPGAPSTENGKSVHWKLGADKEVWVWVMG
                                      10        20        30       

             90       100       110       120       130       140  
pF1KB6 EHHLDKPYDVLCNEIIAERARLKAEQEAEEPRKTHSEEFTNSLKTKSQYHDLQAPDNQQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EHHLDKPYDVLCNEIIAERARLKAEQEAEEPRKTHSEEFTNSLKTKSQYHDLQAPDNQQT
        40        50        60        70        80        90       

            150       160       170       180       190       200  
pF1KB6 KDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNIQQMLADSINRMKAYAFHQKKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNIQQMLADSINRMKAYAFHQKKES
       100       110       120       130       140       150       

            210       220       230       240       250       260  
pF1KB6 MKKKQDEEINQIEEERTKQICKSWKEDSEWQASLRKSKAADEKRRSLAKQAREDYKRLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKKKQDEEINQIEEERTKQICKSWKEDSEWQASLRKSKAADEKRRSLAKQAREDYKRLSL
       160       170       180       190       200       210       

            270       280       290       300       310       320  
pF1KB6 GAQKGRGGERLQSPLRVPQKPERPPLPPKPQFLNSGAYPQKPLRNQGVVRTLSSSAQEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GAQKGRGGERLQSPLRVPQKPERPPLPPKPQFLNSGAYPQKPLRNQGVVRTLSSSAQEDI
       220       230       240       250       260       270       

            330       340       350       360       370       380  
pF1KB6 IRWFKEEQLPLRAGYQKTSDTIAPWFHGILTLKKANELLLSTGMPGSFLIRVSERIKGYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IRWFKEEQLPLRAGYQKTSDTIAPWFHGILTLKKANELLLSTGMPGSFLIRVSERIKGYA
       280       290       300       310       320       330       

            390       400       410       420       430       440  
pF1KB6 LSYLSEDGCKHFLIDASADAYSFLGVDQLQHATLADLVEYHKEEPITSLGKELLLYPCGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSYLSEDGCKHFLIDASADAYSFLGVDQLQHATLADLVEYHKEEPITSLGKELLLYPCGQ
       340       350       360       370       380       390       

            450    
pF1KB6 QDQLPDYLELFE
       ::::::::::::
CCDS55 QDQLPDYLELFE
       400         




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:21:30 2016 done: Sat Nov  5 11:21:31 2016
 Total Scan time:  3.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]