FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6679, 427 aa
  1>>>pF1KB6679 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5721+/-0.00092; mu= 10.8462+/- 0.055
 mean_var=100.3525+/-21.326, 0's: 0 Z-trim(108.1): 87  B-trim: 176 in 1/51
 Lambda= 0.128030
 statistics sampled from 9913 (10004) to 9913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.307), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS7927.1 DDB2 gene_id:1643|Hs108|chr11           ( 427) 2966 558.5 4.5e-159
CCDS73284.1 DDB2 gene_id:1643|Hs108|chr11          ( 238) 1061 206.5 2.3e-53


>>CCDS7927.1 DDB2 gene_id:1643|Hs108|chr11                (427 aa)
 initn: 2966 init1: 2966 opt: 2966  Z-score: 2969.4  bits: 558.5 E(32554): 4.5e-159
Smith-Waterman score: 2966; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
              370       380       390       400       410       420

              
pF1KB6 EEARTRK
       :::::::
CCDS79 EEARTRK
              

>>CCDS73284.1 DDB2 gene_id:1643|Hs108|chr11               (238 aa)
 initn: 1650 init1: 1061 opt: 1061  Z-score: 1071.6  bits: 206.5 E(32554): 2.3e-53
Smith-Waterman score: 1276; 55.7% identity (55.7% similar) in 427 aa overlap (1-427:1-238)

               10        20        30        40        50        60
pF1KB6 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
       ::::::::::::::::::::::::::::::::                            
CCDS73 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KB6 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
                                                                   
CCDS73 ------------------------------------------------------------
                                                                   

              250       260       270       280       290       300
pF1KB6 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
                                                                   
CCDS73 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KB6 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
                                                :::::::::::::::::::
CCDS73 -----------------------------------------AAWHPRYNLIVVGRYPDPN
                                                     160       170 

              370       380       390       400       410       420
pF1KB6 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
             180       190       200       210       220       230 

              
pF1KB6 EEARTRK
       :::::::
CCDS73 EEARTRK
              




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:44:01 2016 done: Sat Nov  5 11:44:02 2016
 Total Scan time:  2.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]