Result of FASTA (omim) for
pF1KB6679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6679, 427 aa
1>>>pF1KB6679 427 - 427 aa - 427 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7084+/-0.000365; mu= 16.2481+/- 0.023
mean_var=114.5989+/-24.078, 0's: 0 Z-trim(115.4): 125 B-trim: 0 in 0/53
Lambda= 0.119807
statistics sampled from 25717 (25861) to 25717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.303), width: 16
Scan time: 9.070
The best scores are: opt bits E(85289)
NP_000098 (OMIM: 278740,600811) DNA damage-binding ( 427) 2966 523.9 3e-148
NP_001287663 (OMIM: 278740,600811) DNA damage-bind ( 238) 1061 194.4 2.7e-49
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 224 49.9 1.3e-05
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 219 49.3 3.5e-05
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 219 49.3 3.5e-05
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 219 49.3 3.5e-05
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 219 49.3 3.5e-05
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 219 49.3 3.5e-05
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 219 49.3 3.5e-05
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 219 49.3 3.5e-05
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 219 49.3 3.5e-05
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 219 49.3 3.5e-05
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 219 49.3 3.5e-05
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 219 49.3 3.5e-05
XP_011527969 (OMIM: 601475) PREDICTED: periodic tr ( 734) 194 45.0 0.00075
NP_005040 (OMIM: 601475) periodic tryptophan prote ( 919) 194 45.1 0.00087
NP_001290177 (OMIM: 609540) WD repeat-containing p ( 212) 171 40.5 0.005
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 171 40.6 0.0061
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 171 40.6 0.0061
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 171 40.9 0.0093
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 171 40.9 0.0093
>>NP_000098 (OMIM: 278740,600811) DNA damage-binding pro (427 aa)
initn: 2966 init1: 2966 opt: 2966 Z-score: 2782.5 bits: 523.9 E(85289): 3e-148
Smith-Waterman score: 2966; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KB6 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
370 380 390 400 410 420
pF1KB6 EEARTRK
:::::::
NP_000 EEARTRK
>>NP_001287663 (OMIM: 278740,600811) DNA damage-binding (238 aa)
initn: 1650 init1: 1061 opt: 1061 Z-score: 1006.1 bits: 194.4 E(85289): 2.7e-49
Smith-Waterman score: 1276; 55.7% identity (55.7% similar) in 427 aa overlap (1-427:1-238)
10 20 30 40 50 60
pF1KB6 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT
::::::::::::::::::::::::::::::::
NP_001 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------------------
130 140 150
190 200 210 220 230 240
pF1KB6 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM
NP_001 ------------------------------------------------------------
250 260 270 280 290 300
pF1KB6 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG
NP_001 ------------------------------------------------------------
310 320 330 340 350 360
pF1KB6 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN
:::::::::::::::::::
NP_001 -----------------------------------------AAWHPRYNLIVVGRYPDPN
160 170
370 380 390 400 410 420
pF1KB6 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQ
180 190 200 210 220 230
pF1KB6 EEARTRK
:::::::
NP_001 EEARTRK
>>NP_004805 (OMIM: 607797) U5 small nuclear ribonucleopr (357 aa)
initn: 144 init1: 70 opt: 224 Z-score: 222.0 bits: 49.9 E(85289): 1.3e-05
Smith-Waterman score: 232; 24.0% identity (52.3% similar) in 367 aa overlap (59-410:9-345)
30 40 50 60 70 80
pF1KB6 ELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSV-Q
::.. : . : :. :: .: :.. :
NP_004 MIEQQKRKGPEL--PLVPVKRQRHELLLGAGSGPGAGQ
10 20 30
90 100 110 120 130 140
pF1KB6 QGLQQSFLHTLDSYRILQKAAP---FDRRATSLAWHPTHPSTVAVGSKGGD--IMLWN-F
: . : : . :: .. . . ::. ...: : : :.::: .
NP_004 QQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILRVFASSDTI
: :. . .:: .:.. :..: .. : ::. . .. .. :. . :. . .. .
NP_004 GDCDNYATLKG--HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT
: : . . ..: ::.. :.: : .. : . .. .: :..: : .. .
NP_004 N--SC-YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII-S
160 170 180 190 200 210
270 280 290 300 310
pF1KB6 ASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVYS---
...:. .:.::::: . . :.. : :.. .: .:. ::.. . . .::..
NP_004 GGIDNDIKVWDLRQNK----LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRP
220 230 240 250 260
320 330 340 350 360 370
pF1KB6 -ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF
: . : . . : ..: .. .: : . :..: : : . :.
NP_004 FAPKERCVKIFQGNVHNFEKNL--LRCSWSPDGSKIAAGS-AD-----------RFVYVW
270 280 290 300 310
380 390 400 410 420
pF1KB6 DGNSGKMMCQLYDPESSGISSLNE--FNPMGDTLASAMGYHILIWSQEEARTRK
: .: ... .: : .: :.:: :.: . ::
NP_004 DTTSRRILYKL--PGHAG--SINEVAFHPDEPIIISASSDKRLYMGEIQ
320 330 340 350
>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.1 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
>>XP_016878352 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.1 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
>>NP_005877 (OMIM: 602703,616212) katanin p80 WD40 repea (655 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.1 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
NP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
NP_005 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
NP_005 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
NP_005 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
NP_005 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
>>XP_006721186 (OMIM: 602703,616212) PREDICTED: katanin (658 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.1 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
XP_006 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
XP_006 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
XP_006 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
XP_006 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
XP_006 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
>>XP_016878350 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.0 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
>>XP_005255829 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.0 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
XP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
XP_005 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
XP_005 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
XP_005 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
XP_005 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
>>XP_016878351 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 166 init1: 80 opt: 219 Z-score: 214.0 bits: 49.3 E(85289): 3.5e-05
Smith-Waterman score: 219; 27.1% identity (57.2% similar) in 236 aa overlap (104-332:13-235)
80 90 100 110 120 130
pF1KB6 HQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKG
::. . ..::. . .:.:.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDD
10 20 30 40
140 150 160 170 180 190
pF1KB6 GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NIL
. ::.. .::. : .. : . . ....: . . :.:. :. :. :... .::
XP_016 CRVNLWSI---NKPNCIMSLTGHTSPVESVRLNT-PEELIVAGSQSGSIRVWDLEAAKIL
50 60 70 80 90
200 210 220 230 240 250
pF1KB6 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVAL
:.. . . :: :::: ...:..:.. :. : .. : .. : :.. : . .
XP_016 RTLMGHKA-NI--CSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRF
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQK
.: : ::.:. :.:::.::: :: .. .: : :::.. : :. : . ..
XP_016 SPDGKW-LASAADDHTVKLWDLTA--GK--MMSEFPGHTGPVNVVEFHPNEYLLASGSSD
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB6 SEIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP
:: .. ... : : : : :
XP_016 RTIRFWDLEKFQVVSCIEGE-PGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVL
220 230 240 250 260
427 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:44:02 2016 done: Sat Nov 5 11:44:03 2016
Total Scan time: 9.070 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]