FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6681, 427 aa
  1>>>pF1KB6681 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9433+/-0.00154; mu= -4.6421+/- 0.090
 mean_var=248.3819+/-51.697, 0's: 0 Z-trim(104.6): 51  B-trim: 58 in 1/50
 Lambda= 0.081379
 statistics sampled from 7950 (7972) to 7950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS4688.1 FLOT1 gene_id:10211|Hs108|chr6          ( 427) 2658 325.9 4.7e-89
CCDS11245.2 FLOT2 gene_id:2319|Hs108|chr17         ( 428) 1240 159.4 6.2e-39
CCDS82097.1 FLOT2 gene_id:2319|Hs108|chr17         ( 428) 1240 159.4 6.2e-39


>>CCDS4688.1 FLOT1 gene_id:10211|Hs108|chr6               (427 aa)
 initn: 2658 init1: 2658 opt: 2658  Z-score: 1712.2  bits: 325.9 E(32554): 4.7e-89
Smith-Waterman score: 2658; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MFFTCGPNEAMVVSGFCRSPPVMVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MFFTCGPNEAMVVSGFCRSPPVMVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VPISVTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VPISVTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 YKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADLAYQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADLAYQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELEARVRKPAEAERYKLERLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELEARVRKPAEAERYKLERLAEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EKSQLIMQAEAEAASVRMRGEAEAFAIGARARAEAEQMAKKAEAFQLYQEAAQLDMLLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKSQLIMQAEAEAASVRMRGEAEAFAIGARARAEAEQMAKKAEAFQLYQEAAQLDMLLEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILTRLPESVERLTGVSISQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILTRLPESVERLTGVSISQVN
              370       380       390       400       410       420

              
pF1KB6 HKPLRTA
       :::::::
CCDS46 HKPLRTA
              

>>CCDS11245.2 FLOT2 gene_id:2319|Hs108|chr17              (428 aa)
 initn: 1406 init1: 987 opt: 1240  Z-score: 812.5  bits: 159.4 E(32554): 6.2e-39
Smith-Waterman score: 1240; 48.1% identity (80.4% similar) in 418 aa overlap (4-419:6-417)

                 10        20          30        40        50      
pF1KB6   MFFTCGPNEAMVVSGFCRSPPV--MVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVY
            : :::::.:::: : .     .: :: ...  ::.. :::::. .::. . : : 
CCDS11 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVE
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 TRHGVPISVTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMT
       : .:: ..:::.:::::. . ::.::.::..::::.  .: ...:.::::: :.:.. .:
CCDS11 TAEGVALTVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT
               70        80         90       100       110         

        120       130       140       150       160       170      
pF1KB6 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA
       ::.::.::..:.. : .::. :.  ::: ..:.:.::..:  ::: ::::..:: ::.::
CCDS11 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDA
     120       130       140       150       160       170         

        180       190       200       210       220       230      
pF1KB6 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADL
        :: :::.::::::::. :.: ........ ..: ..: .::.:.:.. ::: . :.:.:
CCDS11 DIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQL
     180       190       200       210       220       230         

        240       250       260       270       280       290      
pF1KB6 AYQLQVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELEARVRKPAEAERYKLER
       ::.:: :. .:.:........::.: .:.::. ::: : .::: : ::.::::: .....
CCDS11 AYELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQ
     240       250       260       270       280       290         

        300       310       320       330       340       350      
pF1KB6 LAEAEKSQLIMQAEAEAASVRMRGEAEAFAIGARARAEAEQMAKKAEAFQLYQEAAQLDM
       .::.:: . .. :.::: ..:  ::::: .: : ..::::.:  ::::.: : .::.. .
CCDS11 IAEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMAL
     300       310       320       330       340       350         

        360       370       380       390       400       410      
pF1KB6 LLEKLPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILTRLPESVERLTGVSI
       .:: :::.: .:..:::....: .: ::...    :::.::  .:..:: ::. ::::..
CCDS11 VLEALPQIAAKIAAPLTKVDEI-VVLSGDNS----KVTSEVNRLLAELPASVHALTGVDL
     360       370       380            390       400       410    

        420          
pF1KB6 SQVNHKPLRTA   
       :..           
CCDS11 SKIPLIKKATGVQV
          420        

>>CCDS82097.1 FLOT2 gene_id:2319|Hs108|chr17              (428 aa)
 initn: 1406 init1: 987 opt: 1240  Z-score: 812.5  bits: 159.4 E(32554): 6.2e-39
Smith-Waterman score: 1240; 47.6% identity (80.6% similar) in 418 aa overlap (4-419:6-417)

                 10        20          30        40        50      
pF1KB6   MFFTCGPNEAMVVSGFCRSPPV--MVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVY
            : :::::.:::: : .     .: :: ...  ::.. ::.::...:.  . :.. 
CCDS82 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRLSLEVMTILCRCENIE
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 TRHGVPISVTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMT
       : .:::. :::.:::::. . ::.::.::..::::.  .: ...:.::::: :.:.. .:
CCDS82 TSEGVPLFVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT
               70        80         90       100       110         

        120       130       140       150       160       170      
pF1KB6 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA
       ::.::.::..:.. : .::. :.  ::: ..:.:.::..:  ::: ::::..:: ::.::
CCDS82 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDA
     120       130       140       150       160       170         

        180       190       200       210       220       230      
pF1KB6 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADL
        :: :::.::::::::. :.: ........ ..: ..: .::.:.:.. ::: . :.:.:
CCDS82 DIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQL
     180       190       200       210       220       230         

        240       250       260       270       280       290      
pF1KB6 AYQLQVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELEARVRKPAEAERYKLER
       ::.:: :. .:.:........::.: .:.::. ::: : .::: : ::.::::: .....
CCDS82 AYELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQ
     240       250       260       270       280       290         

        300       310       320       330       340       350      
pF1KB6 LAEAEKSQLIMQAEAEAASVRMRGEAEAFAIGARARAEAEQMAKKAEAFQLYQEAAQLDM
       .::.:: . .. :.::: ..:  ::::: .: : ..::::.:  ::::.: : .::.. .
CCDS82 IAEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMAL
     300       310       320       330       340       350         

        360       370       380       390       400       410      
pF1KB6 LLEKLPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILTRLPESVERLTGVSI
       .:: :::.: .:..:::....: .: ::...    :::.::  .:..:: ::. ::::..
CCDS82 VLEALPQIAAKIAAPLTKVDEI-VVLSGDNS----KVTSEVNRLLAELPASVHALTGVDL
     360       370       380            390       400       410    

        420          
pF1KB6 SQVNHKPLRTA   
       :..           
CCDS82 SKIPLIKKATGVQV
          420        




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:45:19 2016 done: Sat Nov  5 11:45:19 2016
 Total Scan time:  2.900 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]