FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6683, 427 aa
  1>>>pF1KB6683 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6390+/-0.000716; mu= 16.4273+/- 0.044
 mean_var=80.8730+/-16.229, 0's: 0 Z-trim(110.6): 43  B-trim: 28 in 1/53
 Lambda= 0.142617
 statistics sampled from 11702 (11743) to 11702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.361), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS14573.1 IL13RA1 gene_id:3597|Hs108|chrX        ( 427) 2968 620.0 1.3e-177
CCDS14565.1 IL13RA2 gene_id:3598|Hs108|chrX        ( 380)  328 76.8 3.9e-14


>>CCDS14573.1 IL13RA1 gene_id:3597|Hs108|chrX             (427 aa)
 initn: 2968 init1: 2968 opt: 2968  Z-score: 3302.1  bits: 620.0 E(32554): 1.3e-177
Smith-Waterman score: 2968; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MEWPARLCGLWALLLCAGGGGGGGGAAPTETQPPVTNLSVSVENLCTVIWTWNPPEGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEWPARLCGLWALLLCAGGGGGGGGAAPTETQPPVTNLSVSVENLCTVIWTWNPPEGASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NCSLWYFSHFGDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NCSLWYFSHFGDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKRNSTLYITMLLIVPVIVAGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKRNSTLYITMLLIVPVIVAGAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 IVLLLYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQTKEETDSVVLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IVLLLYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQTKEETDSVVLIE
              370       380       390       400       410       420

              
pF1KB6 NLKKASQ
       :::::::
CCDS14 NLKKASQ
              

>>CCDS14565.1 IL13RA2 gene_id:3598|Hs108|chrX             (380 aa)
 initn: 326 init1: 202 opt: 328  Z-score: 367.2  bits: 76.8 E(32554): 3.9e-14
Smith-Waterman score: 399; 26.1% identity (55.6% similar) in 403 aa overlap (8-391:10-379)

                 10        20        30        40        50        
pF1KB6   MEWPARLCGLWALLLCAGGGGGGGGAAPTETQPPVTNLSVSVENLCTVIWTWNPPEGA
                : :...:. .  :  ... .  ...::     :.   :  .   :.:: . 
CCDS14 MAFVCLAIGC-LYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSL
               10         20        30        40        50         

         60           70        80         90       100            
pF1KB6 S--SNCSLWY---FSHFGDKQDKKIAPETRRSIE-VPLNERICLQVGS----QCSTNESE
       .  ..:.. :   . ..:..  : :  .. .  .   ::. :  .. .    :: :: ::
CCDS14 DHFKECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAKIHTLLPWQC-TNGSE
      60        70        80        90       100       110         

      110         120       130       140       150       160      
pF1KB6 KPSILVEKC--ISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRS
         :  .:    ::: .: ::. : ...:...: .:. ::: :: ..  ::::.:.::...
CCDS14 VQSSWAETTYWISP-QGIPETKVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEG
      120       130        140       150       160       170       

        170        180       190       200       210       220     
pF1KB6 LEKIHQCENIFR-EGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSR
       :..  :: . .. .:: .:: :   ...:  ...  . .  ...   :. :.    : . 
CCDS14 LDHALQCVDYIKADGQNIGCRFPYLEASD--YKDFYICVNGSSENKPIRSSYFTFQLQNI
       180       190       200         210       220       230     

         230       240        250        260       270       280   
pF1KB6 VKPDPPHIKNLSFHND-DLYVQWENPQNFI-SRCLFYEVEVNNSQTETHNVFYVQEAKCE
       ::: ::   ... ... .. ..:  : . : .::. ::.:. ...:       .  :  :
CCDS14 VKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTT------LVTATVE
         240       250       260       270       280               

           290          300       310       320       330          
pF1KB6 NPEFERNVENTS---CFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSI-GKK
       :  .  .. : .   ::.:             : :.:  :  :: .::.::...   :. 
CCDS14 NETYTLKTTNETRQLCFVV-------------RSKVNIYC-SDDGIWSEWSDKQCWEGED
     290       300                    310        320       330     

     340       350       360       370       380       390         
pF1KB6 RNSTLYITMLLIVPVIVAGAIIVLLLYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHW
        ..   . . :  :    : :..:....  :  ..  :   : :.. :.: :        
CCDS14 LSKKTLLRFWL--PF---GFILILVIFVTGL--LLRKPNTYP-KMIPEFFCDT       
         340            350       360         370        380       

     400       410       420       
pF1KB6 KKYDIYEKQTKEETDSVVLIENLKKASQ




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:22:45 2016 done: Sat Nov  5 11:22:45 2016
 Total Scan time:  3.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]