Result of FASTA (omim) for
pF1KB6689
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6689, 335 aa
1>>>pF1KB6689 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5161+/-0.000428; mu= 3.8962+/- 0.026
mean_var=161.2819+/-33.699, 0's: 0 Z-trim(114.4): 200 B-trim: 493 in 1/57
Lambda= 0.100991
statistics sampled from 23837 (24174) to 23837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.283), width: 16
Scan time: 7.940
The best scores are: opt bits E(85289)
NP_001123486 (OMIM: 176394) pregnancy-specific bet ( 335) 2254 340.9 2.3e-93
NP_002772 (OMIM: 176394) pregnancy-specific beta-1 ( 335) 2254 340.9 2.3e-93
XP_016882492 (OMIM: 176394) PREDICTED: pregnancy-s ( 335) 2254 340.9 2.3e-93
NP_001263424 (OMIM: 176393) pregnancy-specific bet ( 326) 1898 289.0 9.2e-78
XP_016882490 (OMIM: 176393) PREDICTED: pregnancy-s ( 333) 1898 289.0 9.4e-78
NP_001317453 (OMIM: 176390) pregnancy-specific bet ( 326) 1856 282.9 6.4e-76
XP_005259122 (OMIM: 176390) PREDICTED: pregnancy-s ( 333) 1856 282.9 6.5e-76
NP_001288636 (OMIM: 176398) pregnancy-specific bet ( 333) 1853 282.5 8.8e-76
XP_016882494 (OMIM: 176398) PREDICTED: pregnancy-s ( 402) 1843 281.1 2.8e-75
XP_016882487 (OMIM: 176393) PREDICTED: pregnancy-s ( 349) 1766 269.8 6e-72
XP_011525428 (OMIM: 176392) PREDICTED: pregnancy-s ( 357) 1724 263.7 4.2e-70
NP_112536 (OMIM: 176391) pregnancy-specific beta-1 ( 335) 1713 262.1 1.2e-69
NP_002776 (OMIM: 176401) pregnancy-specific beta-1 ( 335) 1651 253.0 6.4e-67
NP_998798 (OMIM: 176393) pregnancy-specific beta-1 ( 326) 1631 250.1 4.7e-66
XP_016882491 (OMIM: 176393) PREDICTED: pregnancy-s ( 333) 1631 250.1 4.8e-66
XP_011525288 (OMIM: 176397) PREDICTED: pregnancy-s ( 326) 1613 247.5 2.9e-65
NP_001288637 (OMIM: 176398) pregnancy-specific bet ( 333) 1607 246.6 5.4e-65
XP_005259132 (OMIM: 176398) PREDICTED: pregnancy-s ( 402) 1597 245.2 1.7e-64
XP_011525427 (OMIM: 176390) PREDICTED: pregnancy-s ( 333) 1584 243.3 5.6e-64
XP_016882489 (OMIM: 176393) PREDICTED: pregnancy-s ( 342) 1499 230.9 3e-60
XP_016882488 (OMIM: 176393) PREDICTED: pregnancy-s ( 349) 1499 230.9 3.1e-60
XP_016881685 (OMIM: 615747) PREDICTED: carcinoembr ( 331) 1272 197.8 2.7e-50
XP_016881683 (OMIM: 615747) PREDICTED: carcinoembr ( 368) 1265 196.8 5.9e-50
XP_011524642 (OMIM: 615747) PREDICTED: carcinoembr ( 415) 1265 196.9 6.4e-50
XP_016881684 (OMIM: 615747) PREDICTED: carcinoembr ( 349) 1260 196.1 9.3e-50
NP_001807 (OMIM: 615747) carcinoembryonic antigen- ( 349) 1260 196.1 9.3e-50
NP_002474 (OMIM: 163980) carcinoembryonic antigen- ( 344) 1234 192.3 1.3e-48
XP_011525292 (OMIM: 163980) PREDICTED: carcinoembr ( 324) 1228 191.4 2.2e-48
NP_001171744 (OMIM: 109770) carcinoembryonic antig ( 461) 1217 189.9 8.9e-48
NP_066296 (OMIM: 176392) pregnancy-specific beta-1 ( 428) 1212 189.2 1.4e-47
XP_011525508 (OMIM: 109770) PREDICTED: carcinoembr ( 351) 1207 188.4 2e-47
NP_002774 (OMIM: 176396) putative pregnancy-specif ( 419) 1207 188.4 2.3e-47
NP_001171745 (OMIM: 109770) carcinoembryonic antig ( 368) 1206 188.2 2.3e-47
NP_001020083 (OMIM: 109770) carcinoembryonic antig ( 464) 1207 188.5 2.4e-47
NP_001192273 (OMIM: 109770) carcinoembryonic antig ( 468) 1207 188.5 2.5e-47
NP_001171742 (OMIM: 109770) carcinoembryonic antig ( 430) 1206 188.3 2.6e-47
NP_001703 (OMIM: 109770) carcinoembryonic antigen- ( 526) 1207 188.5 2.7e-47
NP_001123639 (OMIM: 176397) pregnancy-specific bet ( 419) 1185 185.2 2.1e-46
NP_874366 (OMIM: 176397) pregnancy-specific beta-1 ( 426) 1185 185.2 2.1e-46
NP_001171755 (OMIM: 176390) pregnancy-specific bet ( 417) 1183 184.9 2.5e-46
NP_001171754 (OMIM: 176390) pregnancy-specific bet ( 419) 1183 184.9 2.6e-46
NP_008836 (OMIM: 176390) pregnancy-specific beta-1 ( 426) 1183 184.9 2.6e-46
NP_001284702 (OMIM: 176390) pregnancy-specific bet ( 428) 1183 184.9 2.6e-46
XP_011525429 (OMIM: 176392) PREDICTED: pregnancy-s ( 272) 1160 181.4 1.9e-45
NP_002771 (OMIM: 176393) pregnancy-specific beta-1 ( 419) 1163 182.0 1.9e-45
XP_016882486 (OMIM: 176393) PREDICTED: pregnancy-s ( 426) 1163 182.0 2e-45
XP_011524624 (OMIM: 114890) PREDICTED: carcinoembr ( 524) 1154 180.8 5.7e-45
NP_002775 (OMIM: 176398) pregnancy-specific beta-1 ( 426) 1151 180.3 6.6e-45
XP_016882496 (OMIM: 176398) PREDICTED: pregnancy-s ( 436) 1151 180.3 6.7e-45
XP_016882493 (OMIM: 176398) PREDICTED: pregnancy-s ( 495) 1151 180.3 7.4e-45
>>NP_001123486 (OMIM: 176394) pregnancy-specific beta-1- (335 aa)
initn: 2254 init1: 2254 opt: 2254 Z-score: 1797.2 bits: 340.9 E(85289): 2.3e-93
Smith-Waterman score: 2254; 99.4% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPLSAPPCTQHITWKGLLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::::::::::::::::::::::
NP_001 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
310 320 330
>>NP_002772 (OMIM: 176394) pregnancy-specific beta-1-gly (335 aa)
initn: 2254 init1: 2254 opt: 2254 Z-score: 1797.2 bits: 340.9 E(85289): 2.3e-93
Smith-Waterman score: 2254; 99.4% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_002 MGPLSAPPCTQHITWKGLLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_002 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::::::::::::::::::::::
NP_002 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
310 320 330
>>XP_016882492 (OMIM: 176394) PREDICTED: pregnancy-speci (335 aa)
initn: 2254 init1: 2254 opt: 2254 Z-score: 1797.2 bits: 340.9 E(85289): 2.3e-93
Smith-Waterman score: 2254; 99.4% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
XP_016 MGPLSAPPCTQHITWKGLLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
XP_016 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::::::::::::::::::::::
XP_016 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
310 320 330
>>NP_001263424 (OMIM: 176393) pregnancy-specific beta-1- (326 aa)
initn: 1898 init1: 1898 opt: 1898 Z-score: 1517.0 bits: 289.0 E(85289): 9.2e-78
Smith-Waterman score: 1898; 88.5% identity (94.1% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::::::::::.::::::::::::::::: : :::::::: :::::::::::::::::::
NP_001 MGPLSAPPCTQRITWKGVLLTASLLNFWNPPTTAQVTIEAQPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
:::::::::::. ::::::::::::: ::::::.::: :::::::::::::.::::::
NP_001 NLAGYIWYKGQMTYLYHYITSYVVDGQRIIYGPAYSGRERVYSNASLLIQNVTQEDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
::::::: : : ::::.:::.:. :: :::::::: .::::::::.:::::::.::::::
NP_001 TLHIIKRRDGTGGVTGHFTFTLHPKLSKPYITINNLNPRENKDVLTFTCEPKSKNYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
:::::::::::::::::::::::::.:::::::::.:::::: ::..:::::::::::::
NP_001 WLNGQSLPVSPRVKRPIENRILILPNVTRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
::::::::::::::::::::::::::: :.: :::::::: :::::::::::::: :::.
NP_001 LPSIYPSFTYYRSGENLYLSCFAESNPRAQYSWTINGKFQLSGQKLSIPQITTKHSGLYA
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::.::.::
NP_001 CSVRNSATGKESSKSITVKVSDWILP
310 320
>>XP_016882490 (OMIM: 176393) PREDICTED: pregnancy-speci (333 aa)
initn: 1898 init1: 1898 opt: 1898 Z-score: 1516.9 bits: 289.0 E(85289): 9.4e-78
Smith-Waterman score: 1898; 88.5% identity (94.1% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::::::::::.::::::::::::::::: : :::::::: :::::::::::::::::::
XP_016 MGPLSAPPCTQRITWKGVLLTASLLNFWNPPTTAQVTIEAQPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
:::::::::::. ::::::::::::: ::::::.::: :::::::::::::.::::::
XP_016 NLAGYIWYKGQMTYLYHYITSYVVDGQRIIYGPAYSGRERVYSNASLLIQNVTQEDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
::::::: : : ::::.:::.:. :: :::::::: .::::::::.:::::::.::::::
XP_016 TLHIIKRRDGTGGVTGHFTFTLHPKLSKPYITINNLNPRENKDVLTFTCEPKSKNYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
:::::::::::::::::::::::::.:::::::::.:::::: ::..:::::::::::::
XP_016 WLNGQSLPVSPRVKRPIENRILILPNVTRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
::::::::::::::::::::::::::: :.: :::::::: :::::::::::::: :::.
XP_016 LPSIYPSFTYYRSGENLYLSCFAESNPRAQYSWTINGKFQLSGQKLSIPQITTKHSGLYA
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::.::.::
XP_016 CSVRNSATGKESSKSITVKVSGKWIPASLAIGI
310 320 330
>>NP_001317453 (OMIM: 176390) pregnancy-specific beta-1- (326 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 1484.0 bits: 282.9 E(85289): 6.4e-76
Smith-Waterman score: 1856; 86.9% identity (92.2% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:: ::::::::.: :::.::::::::::::: :::::::: : :::::::::::::::::
NP_001 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
::.::::::::. :::::::::::::.: ::::::.::::.:::::::::::::::::::
NP_001 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
:::::: : :::::: :::.:. ::::::::::: .:::::::: ::::::::::::::
NP_001 TLHIIKGDDGTRGVTGRFTFTLHPKLPKPYITINNLNPRENKDVLNFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
:::::::::::::::::::::::::::::::::::.:::::: ::..:::::::::::::
NP_001 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
:: :::::::::::: ::::: :.:::::.: :::: ::: :::: : .::::: :::.
NP_001 LPRIYPSFTYYRSGEVLYLSCSADSNPPAQYSWTINEKFQLPGQKLFIRHITTKHSGLYV
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::::::::
NP_001 CSVRNSATGKESSKSMTVEVSDWTVP
310 320
>>XP_005259122 (OMIM: 176390) PREDICTED: pregnancy-speci (333 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 1483.8 bits: 282.9 E(85289): 6.5e-76
Smith-Waterman score: 1856; 86.9% identity (92.2% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:: ::::::::.: :::.::::::::::::: :::::::: : :::::::::::::::::
XP_005 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
::.::::::::. :::::::::::::.: ::::::.::::.:::::::::::::::::::
XP_005 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
:::::: : :::::: :::.:. ::::::::::: .:::::::: ::::::::::::::
XP_005 TLHIIKGDDGTRGVTGRFTFTLHPKLPKPYITINNLNPRENKDVLNFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
:::::::::::::::::::::::::::::::::::.:::::: ::..:::::::::::::
XP_005 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
:: :::::::::::: ::::: :.:::::.: :::: ::: :::: : .::::: :::.
XP_005 LPRIYPSFTYYRSGEVLYLSCSADSNPPAQYSWTINEKFQLPGQKLFIRHITTKHSGLYV
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::::::::::::::::::::
XP_005 CSVRNSATGKESSKSMTVEVSGKWIPASLAIGF
310 320 330
>>NP_001288636 (OMIM: 176398) pregnancy-specific beta-1- (333 aa)
initn: 1931 init1: 1853 opt: 1853 Z-score: 1481.5 bits: 282.5 E(85289): 8.8e-76
Smith-Waterman score: 1853; 84.5% identity (92.3% similar) in 323 aa overlap (1-323:1-323)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::: :: :::.:::::.::::::::::: : ::.::::: :::::::::::::::::::
NP_001 MGPLPAPSCTQRITWKGLLLTASLLNFWNPPTTAEVTIEAQPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
:: ::.::::.. :::::: ::.:::.: ::::::.::::::::::::::::::.:::.:
NP_001 NLPGYFWYKGEMTDLYHYIISYIVDGKIIIYGPAYSGRETVYSNASLLIQNVTRKDAGTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
:::::::::.:: .:::.:: ::: ::::::: .:::::::::::::::::::::::
NP_001 TLHIIKRGDETREEIRHFTFTLYSKLPIPYITINNLNPRENKDVLAFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
::::::::::: :::::::::::::::::::::::.:::::: ::..:.:: ::::::::
NP_001 WLNGQSLPVSPGVKRPIENRILILPSVTRNETGPYQCEIRDRYGGLRSNPVILNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
:: :::::::::::::: ::::.::::::::::::::::::::::: ::::: .: :::.
NP_001 LPRIYPSFTYYRSGENLDLSCFTESNPPAEYFWTINGKFQQSGQKLFIPQITRNHSGLYA
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::.::::::: ::::::.::.:
NP_001 CSVHNSATGKEISKSMTVKVSGPCHGDLTESQS
310 320 330
>>XP_016882494 (OMIM: 176398) PREDICTED: pregnancy-speci (402 aa)
initn: 1843 init1: 1843 opt: 1843 Z-score: 1472.5 bits: 281.1 E(85289): 2.8e-75
Smith-Waterman score: 1843; 84.7% identity (92.2% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQ
:::: :: :::.:::::.::::::::::: : ::.::::: :::::::::::::::::::
XP_016 MGPLPAPSCTQRITWKGLLLTASLLNFWNPPTTAEVTIEAQPPKVSEGKDVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSY
:: ::.::::.. :::::: ::.:::.: ::::::.::::::::::::::::::.:::.:
XP_016 NLPGYFWYKGEMTDLYHYIISYIVDGKIIIYGPAYSGRETVYSNASLLIQNVTRKDAGTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIW
:::::::::.:: .:::.:: ::: ::::::: .:::::::::::::::::::::::
XP_016 TLHIIKRGDETREEIRHFTFTLYSKLPIPYITINNLNPRENKDVLAFTCEPKSENYTYIW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDGGMHSDPVTLNVLYGPD
::::::::::: :::::::::::::::::::::::.:::::: ::..:.:: ::::::::
XP_016 WLNGQSLPVSPGVKRPIENRILILPSVTRNETGPYQCEIRDRYGGLRSNPVILNVLYGPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQKLSIPQITTKHRGLYT
:: :::::::::::::: ::::.::::::::::::::::::::::: ::::: .: :::.
XP_016 LPRIYPSFTYYRSGENLDLSCFTESNPPAEYFWTINGKFQQSGQKLFIPQITRNHSGLYA
250 260 270 280 290 300
310 320 330
pF1KB6 CSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
:::.::::::: ::::::.::
XP_016 CSVHNSATGKEISKSMTVKVSGKWIPASLAVGFYVESIWLSEKSQENIFIPSLCPMGTSK
310 320 330 340 350 360
>>XP_016882487 (OMIM: 176393) PREDICTED: pregnancy-speci (349 aa)
initn: 1754 init1: 1754 opt: 1766 Z-score: 1412.7 bits: 269.8 E(85289): 6e-72
Smith-Waterman score: 1766; 84.0% identity (91.2% similar) in 319 aa overlap (3-321:19-337)
10 20 30 40
pF1KB6 MGPLSAPPCTQHITWKGVLLTASLLNFWNLPITAQVTIEALPPK
: .. : ..:: . . :::::::: : :::::::: :::
XP_016 MKHCPQQETSTIGGKKKHPEGGDPENSHIYRSLPPVPASLLNFWNPPTTAQVTIEAQPPK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 VSEGKDVLLLVHNLPQNLAGYIWYKGQLMDLYHYITSYVVDGQINIYGPAYTGRETVYSN
:::::::::::::::::::::::::::. ::::::::::::: ::::::.::: ::::
XP_016 VSEGKDVLLLVHNLPQNLAGYIWYKGQMTYLYHYITSYVVDGQRIIYGPAYSGRERVYSN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 ASLLIQNVTREDAGSYTLHIIKRGDRTRGVTGYFTFNLYLKLPKPYITINNSKPRENKDV
:::::::::.::::::::::::: : : ::::.:::.:. :: :::::::: .:::::::
XP_016 ASLLIQNVTQEDAGSYTLHIIKRRDGTGGVTGHFTFTLHPKLSKPYITINNLNPRENKDV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 LAFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYECEIRDRDG
:.:::::::.:::::::::::::::::::::::::::::::.:::::::::.:::::: :
XP_016 LTFTCEPKSKNYTYIWWLNGQSLPVSPRVKRPIENRILILPNVTRNETGPYQCEIRDRYG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 GMHSDPVTLNVLYGPDLPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQQSGQ
:..:::::::::::::::::::::::::::::::::::::::: :.: :::::::: :::
XP_016 GIRSDPVTLNVLYGPDLPSIYPSFTYYRSGENLYLSCFAESNPRAQYSWTINGKFQLSGQ
250 260 270 280 290 300
290 300 310 320 330
pF1KB6 KLSIPQITTKHRGLYTCSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI
::::::::::: :::.:::::::::::::::.::.::
XP_016 KLSIPQITTKHSGLYACSVRNSATGKESSKSITVKVSGKWIPASLAIGI
310 320 330 340
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:14:22 2016 done: Sat Nov 5 18:14:23 2016
Total Scan time: 7.940 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]