Result of FASTA (ccds) for
pF1KB6701
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6701, 62 aa
1>>>pF1KB6701 62 - 62 aa - 62 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1643+/-0.000778; mu= 3.7456+/- 0.047
mean_var=145.6280+/-27.017, 0's: 0 Z-trim(114.9): 63 B-trim: 0 in 0/52
Lambda= 0.106280
statistics sampled from 15381 (15446) to 15381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.474), width: 16
Scan time: 1.090
The best scores are: opt bits E(32554)
CCDS76873.1 MT1G gene_id:4495|Hs108|chr16 ( 62) 511 87.7 5e-19
CCDS10766.1 MT1G gene_id:4495|Hs108|chr16 ( 61) 494 85.1 3e-18
CCDS32456.1 MT1F gene_id:4494|Hs108|chr16 ( 61) 479 82.8 1.5e-17
CCDS10764.2 MT1E gene_id:4493|Hs108|chr16 ( 61) 478 82.6 1.7e-17
CCDS10763.1 MT2A gene_id:4502|Hs108|chr16 ( 61) 476 82.3 2e-17
CCDS10767.1 MT1H gene_id:4496|Hs108|chr16 ( 61) 464 80.5 7.3e-17
CCDS32454.1 MT1A gene_id:4489|Hs108|chr16 ( 61) 462 80.2 9e-17
CCDS10768.1 MT1X gene_id:4501|Hs108|chr16 ( 61) 460 79.9 1.1e-16
CCDS10765.1 MT1B gene_id:4490|Hs108|chr16 ( 61) 452 78.6 2.6e-16
CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1 ( 61) 437 76.3 1.3e-15
CCDS42166.1 MT1M gene_id:4499|Hs108|chr16 ( 61) 436 76.2 1.4e-15
CCDS10762.1 MT3 gene_id:4504|Hs108|chr16 ( 68) 362 64.9 4e-12
CCDS42165.1 MT4 gene_id:84560|Hs108|chr16 ( 62) 344 62.1 2.6e-11
>>CCDS76873.1 MT1G gene_id:4495|Hs108|chr16 (62 aa)
initn: 511 init1: 511 opt: 511 Z-score: 455.1 bits: 87.7 E(32554): 5e-19
Smith-Waterman score: 511; 100.0% identity (100.0% similar) in 62 aa overlap (1-62:1-62)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50 60
pF1KB6 CA
::
CCDS76 CA
>>CCDS10766.1 MT1G gene_id:4495|Hs108|chr16 (61 aa)
initn: 443 init1: 443 opt: 494 Z-score: 441.1 bits: 85.1 E(32554): 3e-18
Smith-Waterman score: 494; 98.4% identity (98.4% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDPNCSCAA-GVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS10 CA
60
>>CCDS32456.1 MT1F gene_id:4494|Hs108|chr16 (61 aa)
initn: 428 init1: 428 opt: 479 Z-score: 428.6 bits: 82.8 E(32554): 1.5e-17
Smith-Waterman score: 479; 93.4% identity (98.4% similar) in 61 aa overlap (1-61:1-60)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::: :::::::.::::::::::::::::::::::::.::::::.::::::::::
CCDS32 MDPNCSCAA-GVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSC
10 20 30 40 50
pF1KB6 CA
:
CCDS32 CD
60
>>CCDS10764.2 MT1E gene_id:4493|Hs108|chr16 (61 aa)
initn: 423 init1: 423 opt: 478 Z-score: 427.8 bits: 82.6 E(32554): 1.7e-17
Smith-Waterman score: 478; 91.9% identity (98.4% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::..: :::::.:::::::::::::::::::::::::::::::.::::::::::
CCDS10 MDPNCSCATGG-SCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS10 CA
60
>>CCDS10763.1 MT2A gene_id:4502|Hs108|chr16 (61 aa)
initn: 425 init1: 425 opt: 476 Z-score: 426.2 bits: 82.3 E(32554): 2e-17
Smith-Waterman score: 476; 93.5% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::: : :::::.:::::::::::::::::::::::::::::::::::::.::::
CCDS10 MDPNCSCAA-GDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS10 CA
60
>>CCDS10767.1 MT1H gene_id:4496|Hs108|chr16 (61 aa)
initn: 410 init1: 410 opt: 464 Z-score: 416.2 bits: 80.5 E(32554): 7.3e-17
Smith-Waterman score: 464; 88.7% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::: :.: ::.::.:::::.:::::::::::::::.::::::::::::::::::::
CCDS10 MDPNCSCEAGG-SCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS10 CA
60
>>CCDS32454.1 MT1A gene_id:4489|Hs108|chr16 (61 aa)
initn: 407 init1: 407 opt: 462 Z-score: 414.6 bits: 80.2 E(32554): 9e-17
Smith-Waterman score: 462; 88.7% identity (98.4% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::..: ::::..:::::::::::::::::::::..:::::::::::::::::::
CCDS32 MDPNCSCATGG-SCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS32 CA
60
>>CCDS10768.1 MT1X gene_id:4501|Hs108|chr16 (61 aa)
initn: 401 init1: 401 opt: 460 Z-score: 412.9 bits: 79.9 E(32554): 1.1e-16
Smith-Waterman score: 460; 87.1% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
:::::::. .: ::.::.:::::::::::::::::::::::::::::::::::.:.::::
CCDS10 MDPNCSCSPVG-SCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS10 CA
60
>>CCDS10765.1 MT1B gene_id:4490|Hs108|chr16 (61 aa)
initn: 397 init1: 397 opt: 452 Z-score: 406.3 bits: 78.6 E(32554): 2.6e-16
Smith-Waterman score: 452; 83.9% identity (95.2% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
:::::::...: ::.::.:::::::::::::: ::::::::::::::::.:::.:::: :
CCDS10 MDPNCSCTTGG-SCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRC
10 20 30 40 50
pF1KB6 CA
::
CCDS10 CA
60
>>CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1 (61 aa)
initn: 382 init1: 382 opt: 437 Z-score: 393.8 bits: 76.3 E(32554): 1.3e-15
Smith-Waterman score: 437; 87.1% identity (95.2% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
:::::::::.: : .::.:::::.:::::::::::::::.:::::::::: :::::::::
CCDS31 MDPNCSCAAGG-SYACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCIRKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
CCDS31 CA
60
62 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:41:28 2016 done: Fri Nov 4 15:41:28 2016
Total Scan time: 1.090 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]