FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6703, 73 aa
  1>>>pF1KB6703 73 - 73 aa - 73 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6785+/-0.000659; mu= 9.2767+/- 0.040
 mean_var=43.8856+/- 8.744, 0's: 0 Z-trim(107.6): 19  B-trim: 0 in 0/49
 Lambda= 0.193604
 statistics sampled from 9684 (9687) to 9684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.298), width:  16
 Scan time:  1.120

The best scores are:                                      opt bits E(32554)
CCDS12219.1 UBL5 gene_id:59286|Hs108|chr19         (  73)  496 145.3 3.2e-36


>>CCDS12219.1 UBL5 gene_id:59286|Hs108|chr19              (73 aa)
 initn: 496 init1: 496 opt: 496  Z-score: 763.9  bits: 145.3 E(32554): 3.2e-36
Smith-Waterman score: 496; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB6 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY
               10        20        30        40        50        60

               70   
pF1KB6 EIHDGMNLELYYQ
       :::::::::::::
CCDS12 EIHDGMNLELYYQ
               70   




73 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:14:58 2016 done: Sat Nov  5 18:14:58 2016
 Total Scan time:  1.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]