FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6703, 73 aa
  1>>>pF1KB6703 73 - 73 aa - 73 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5374+/-0.000321; mu= 10.1345+/- 0.020
 mean_var=45.6973+/- 9.181, 0's: 0 Z-trim(114.7): 23  B-trim: 60 in 1/53
 Lambda= 0.189727
 statistics sampled from 24659 (24666) to 24659 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.289), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(85289)
NP_001041706 (OMIM: 606849) ubiquitin-like protein (  73)  496 142.7 5.1e-35
NP_077268 (OMIM: 606849) ubiquitin-like protein 5  (  73)  496 142.7 5.1e-35


>>NP_001041706 (OMIM: 606849) ubiquitin-like protein 5 [  (73 aa)
 initn: 496 init1: 496 opt: 496  Z-score: 749.6  bits: 142.7 E(85289): 5.1e-35
Smith-Waterman score: 496; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB6 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY
               10        20        30        40        50        60

               70   
pF1KB6 EIHDGMNLELYYQ
       :::::::::::::
NP_001 EIHDGMNLELYYQ
               70   

>>NP_077268 (OMIM: 606849) ubiquitin-like protein 5 [Hom  (73 aa)
 initn: 496 init1: 496 opt: 496  Z-score: 749.6  bits: 142.7 E(85289): 5.1e-35
Smith-Waterman score: 496; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB6 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY
               10        20        30        40        50        60

               70   
pF1KB6 EIHDGMNLELYYQ
       :::::::::::::
NP_077 EIHDGMNLELYYQ
               70   




73 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:14:58 2016 done: Sat Nov  5 18:14:59 2016
 Total Scan time:  3.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]