FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6705, 76 aa
  1>>>pF1KB6705 76 - 76 aa - 76 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7066+/-0.000542; mu= 9.4018+/- 0.032
 mean_var=42.8231+/- 8.571, 0's: 0 Z-trim(110.8): 22  B-trim: 649 in 1/49
 Lambda= 0.195991
 statistics sampled from 11878 (11899) to 11878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.366), width:  16
 Scan time:  1.180

The best scores are:                                      opt bits E(32554)
CCDS1903.1 SNRPG gene_id:6637|Hs108|chr2           (  76)  499 147.5 7.7e-37
CCDS82462.1 SNRPG gene_id:6637|Hs108|chr2          (  68)  423 126.0   2e-30
CCDS82461.1 SNRPG gene_id:6637|Hs108|chr2          (  64)  415 123.7 9.3e-30
CCDS82463.1 SNRPG gene_id:6637|Hs108|chr2          (  96)  409 122.0 4.4e-29


>>CCDS1903.1 SNRPG gene_id:6637|Hs108|chr2                (76 aa)
 initn: 499 init1: 499 opt: 499  Z-score: 774.9  bits: 147.5 E(32554): 7.7e-37
Smith-Waterman score: 499; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB6 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
               10        20        30        40        50        60

               70      
pF1KB6 VIRGNSIIMLEALERV
       ::::::::::::::::
CCDS19 VIRGNSIIMLEALERV
               70      

>>CCDS82462.1 SNRPG gene_id:6637|Hs108|chr2               (68 aa)
 initn: 423 init1: 423 opt: 423  Z-score: 659.5  bits: 126.0 E(32554): 2e-30
Smith-Waterman score: 423; 100.0% identity (100.0% similar) in 65 aa overlap (12-76:4-68)

               10        20        30        40        50        60
pF1KB6 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82         MCLFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
                       10        20        30        40        50  

               70      
pF1KB6 VIRGNSIIMLEALERV
       ::::::::::::::::
CCDS82 VIRGNSIIMLEALERV
             60        

>>CCDS82461.1 SNRPG gene_id:6637|Hs108|chr2               (64 aa)
 initn: 415 init1: 415 opt: 415  Z-score: 647.7  bits: 123.7 E(32554): 9.3e-30
Smith-Waterman score: 415; 100.0% identity (100.0% similar) in 64 aa overlap (13-76:1-64)

               10        20        30        40        50        60
pF1KB6 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82             MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
                           10        20        30        40        

               70      
pF1KB6 VIRGNSIIMLEALERV
       ::::::::::::::::
CCDS82 VIRGNSIIMLEALERV
       50        60    

>>CCDS82463.1 SNRPG gene_id:6637|Hs108|chr2               (96 aa)
 initn: 406 init1: 406 opt: 409  Z-score: 635.7  bits: 122.0 E(32554): 4.4e-29
Smith-Waterman score: 409; 82.9% identity (89.5% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB6 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
               10        20        30        40        50        60

               70                          
pF1KB6 VIRGNSIIMLEALERV                    
           :. .  . :..:                    
CCDS82 DNIPNKAVSPKFLKKVNQKGQLTFSKLLSIKTSKEW
               70        80        90      




76 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:28:42 2016 done: Fri Nov  4 23:28:42 2016
 Total Scan time:  1.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]