FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6706, 129 aa
  1>>>pF1KB6706 129 - 129 aa - 129 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1784+/-0.0007; mu= 11.4088+/- 0.042
 mean_var=58.1380+/-11.287, 0's: 0 Z-trim(108.4): 12  B-trim: 0 in 0/51
 Lambda= 0.168207
 statistics sampled from 10216 (10220) to 10216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.314), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS5649.1 TAC1 gene_id:6863|Hs108|chr7            ( 129)  856 215.4 7.9e-57
CCDS5650.1 TAC1 gene_id:6863|Hs108|chr7            ( 111)  642 163.4   3e-41
CCDS5651.1 TAC1 gene_id:6863|Hs108|chr7            ( 114)  497 128.2 1.2e-30


>>CCDS5649.1 TAC1 gene_id:6863|Hs108|chr7                 (129 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1133.7  bits: 215.4 E(32554): 7.9e-57
Smith-Waterman score: 856; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
               70        80        90       100       110       120

                
pF1KB6 AMQNYERRR
       :::::::::
CCDS56 AMQNYERRR
                

>>CCDS5650.1 TAC1 gene_id:6863|Hs108|chr7                 (111 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 854.1  bits: 163.4 E(32554): 3e-41
Smith-Waterman score: 689; 85.3% identity (86.0% similar) in 129 aa overlap (1-129:1-111)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       ::::::::::::::::::::::::::::::::::::                  .:::::
CCDS56 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK------------------MAYERS
               70        80        90                         100  

                
pF1KB6 AMQNYERRR
       :::::::::
CCDS56 AMQNYERRR
            110 

>>CCDS5651.1 TAC1 gene_id:6863|Hs108|chr7                 (114 aa)
 initn: 756 init1: 497 opt: 497  Z-score: 663.7  bits: 128.2 E(32554): 1.2e-30
Smith-Waterman score: 730; 88.4% identity (88.4% similar) in 129 aa overlap (1-129:1-114)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       :::::::::::::               ::::::::::::::::::::::::::::::::
CCDS56 PQQFFGLMGKRDA---------------GHGQISHKRHKTDSFVGLMGKRALNSVAYERS
               70                       80        90       100     

                
pF1KB6 AMQNYERRR
       :::::::::
CCDS56 AMQNYERRR
         110    




129 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:19:06 2016 done: Sat Nov  5 08:19:07 2016
 Total Scan time:  1.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]