FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6706, 129 aa
  1>>>pF1KB6706 129 - 129 aa - 129 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8983+/-0.000328; mu= 13.1013+/- 0.020
 mean_var=57.5439+/-11.368, 0's: 0 Z-trim(115.4): 7  B-trim: 1002 in 1/53
 Lambda= 0.169073
 statistics sampled from 25816 (25823) to 25816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.303), width:  16
 Scan time:  4.930

The best scores are:                                      opt bits E(85289)
NP_003173 (OMIM: 162320) protachykinin-1 isoform b ( 129)  856 216.4   1e-56
NP_054702 (OMIM: 162320) protachykinin-1 isoform a ( 111)  642 164.1 4.8e-41
NP_054704 (OMIM: 162320) protachykinin-1 isoform d (  96)  497 128.7 1.9e-30
NP_054703 (OMIM: 162320) protachykinin-1 isoform g ( 114)  497 128.8 2.2e-30


>>NP_003173 (OMIM: 162320) protachykinin-1 isoform beta   (129 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1139.1  bits: 216.4 E(85289): 1e-56
Smith-Waterman score: 856; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
               70        80        90       100       110       120

                
pF1KB6 AMQNYERRR
       :::::::::
NP_003 AMQNYERRR
                

>>NP_054702 (OMIM: 162320) protachykinin-1 isoform alpha  (111 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 858.0  bits: 164.1 E(85289): 4.8e-41
Smith-Waterman score: 689; 85.3% identity (86.0% similar) in 129 aa overlap (1-129:1-111)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       ::::::::::::::::::::::::::::::::::::                  .:::::
NP_054 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK------------------MAYERS
               70        80        90                         100  

                
pF1KB6 AMQNYERRR
       :::::::::
NP_054 AMQNYERRR
            110 

>>NP_054704 (OMIM: 162320) protachykinin-1 isoform delta  (96 aa)
 initn: 577 init1: 497 opt: 497  Z-score: 667.7  bits: 128.7 E(85289): 1.9e-30
Smith-Waterman score: 563; 73.6% identity (74.4% similar) in 129 aa overlap (1-129:1-96)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       :::::::::::::               ::::::::                  .:::::
NP_054 PQQFFGLMGKRDA---------------GHGQISHK------------------MAYERS
               70                       80                         

                
pF1KB6 AMQNYERRR
       :::::::::
NP_054 AMQNYERRR
        90      

>>NP_054703 (OMIM: 162320) protachykinin-1 isoform gamma  (114 aa)
 initn: 756 init1: 497 opt: 497  Z-score: 666.6  bits: 128.8 E(85289): 2.2e-30
Smith-Waterman score: 730; 88.4% identity (88.4% similar) in 129 aa overlap (1-129:1-114)

               10        20        30        40        50        60
pF1KB6 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
       :::::::::::::               ::::::::::::::::::::::::::::::::
NP_054 PQQFFGLMGKRDA---------------GHGQISHKRHKTDSFVGLMGKRALNSVAYERS
               70                       80        90       100     

                
pF1KB6 AMQNYERRR
       :::::::::
NP_054 AMQNYERRR
         110    




129 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:19:07 2016 done: Sat Nov  5 08:19:08 2016
 Total Scan time:  4.930 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]