FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6708, 129 aa
  1>>>pF1KB6708 129 - 129 aa - 129 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6608+/-0.000555; mu= 10.1335+/- 0.033
 mean_var=76.1827+/-15.566, 0's: 0 Z-trim(114.1): 1  B-trim: 0 in 0/55
 Lambda= 0.146942
 statistics sampled from 14671 (14672) to 14671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.451), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS2032.1 COX5B gene_id:1329|Hs108|chr2           ( 129)  875 193.5   3e-50


>>CCDS2032.1 COX5B gene_id:1329|Hs108|chr2                (129 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1015.6  bits: 193.5 E(32554): 3e-50
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB6 MASRLLRGAGTLAAQALRARGPSGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MASRLLRGAGTLAAQALRARGPSGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAHY
               70        80        90       100       110       120

                
pF1KB6 KLVPQQLAH
       :::::::::
CCDS20 KLVPQQLAH
                




129 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:29:30 2016 done: Fri Nov  4 23:29:31 2016
 Total Scan time:  1.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]