FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6708, 129 aa
  1>>>pF1KB6708 129 - 129 aa - 129 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4083+/-0.000262; mu= 11.3194+/- 0.016
 mean_var=73.0715+/-14.863, 0's: 0 Z-trim(120.7): 1  B-trim: 0 in 0/57
 Lambda= 0.150038
 statistics sampled from 36298 (36299) to 36298 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.426), width:  16
 Scan time:  3.860

The best scores are:                                      opt bits E(85289)
NP_001853 (OMIM: 123866) cytochrome c oxidase subu ( 129)  875 197.3 5.5e-51


>>NP_001853 (OMIM: 123866) cytochrome c oxidase subunit   (129 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1036.3  bits: 197.3 E(85289): 5.5e-51
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB6 MASRLLRGAGTLAAQALRARGPSGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASRLLRGAGTLAAQALRARGPSGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAHY
               70        80        90       100       110       120

                
pF1KB6 KLVPQQLAH
       :::::::::
NP_001 KLVPQQLAH
                




129 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:29:31 2016 done: Fri Nov  4 23:29:31 2016
 Total Scan time:  3.860 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]