FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6709, 79 aa
  1>>>pF1KB6709 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7176+/-0.000592; mu= 10.3451+/- 0.035
 mean_var=54.0786+/-10.774, 0's: 0 Z-trim(111.9): 51  B-trim: 425 in 2/48
 Lambda= 0.174406
 statistics sampled from 12674 (12726) to 12674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.391), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS4286.1 SPINK1 gene_id:6690|Hs108|chr5          (  79)  539 142.6 2.4e-35


>>CCDS4286.1 SPINK1 gene_id:6690|Hs108|chr5               (79 aa)
 initn: 539 init1: 539 opt: 539  Z-score: 748.2  bits: 142.6 E(32554): 2.4e-35
Smith-Waterman score: 539; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MKVTGIFLLSALALLSLSGNTGADSLGREAKCYNELNGCTKIYDPVCGTDGNTYPNECVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKVTGIFLLSALALLSLSGNTGADSLGREAKCYNELNGCTKIYDPVCGTDGNTYPNECVL
               10        20        30        40        50        60

               70         
pF1KB6 CFENRKRQTSILIQKSGPC
       :::::::::::::::::::
CCDS42 CFENRKRQTSILIQKSGPC
               70         




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:30:03 2016 done: Fri Nov  4 23:30:03 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]