FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6710, 130 aa 1>>>pF1KB6710 130 - 130 aa - 130 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0043+/-0.000354; mu= 11.2221+/- 0.022 mean_var=45.5387+/- 9.092, 0's: 0 Z-trim(113.0): 28 B-trim: 0 in 0/54 Lambda= 0.190057 statistics sampled from 22130 (22147) to 22130 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.26), width: 16 Scan time: 4.200 The best scores are: opt bits E(85289) NP_001010 (OMIM: 603674) 40S ribosomal protein S15 ( 130) 860 242.9 1.1e-64 NP_001025180 (OMIM: 603674) 40S ribosomal protein ( 130) 860 242.9 1.1e-64 >>NP_001010 (OMIM: 603674) 40S ribosomal protein S15a [H (130 aa) initn: 860 init1: 860 opt: 860 Z-score: 1282.2 bits: 242.9 E(85289): 1.1e-64 Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130) 10 20 30 40 50 60 pF1KB6 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 70 80 90 100 110 120 130 pF1KB6 TGGKILGFFF :::::::::: NP_001 TGGKILGFFF 130 >>NP_001025180 (OMIM: 603674) 40S ribosomal protein S15a (130 aa) initn: 860 init1: 860 opt: 860 Z-score: 1282.2 bits: 242.9 E(85289): 1.1e-64 Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130) 10 20 30 40 50 60 pF1KB6 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 70 80 90 100 110 120 130 pF1KB6 TGGKILGFFF :::::::::: NP_001 TGGKILGFFF 130 130 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 18:59:10 2016 done: Sat Nov 5 18:59:11 2016 Total Scan time: 4.200 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]