FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6713, 80 aa 1>>>pF1KB6713 80 - 80 aa - 80 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9357+/-0.000648; mu= 8.3961+/- 0.039 mean_var=45.7652+/- 9.161, 0's: 0 Z-trim(108.2): 23 B-trim: 0 in 0/50 Lambda= 0.189586 statistics sampled from 10045 (10063) to 10045 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.309), width: 16 Scan time: 1.230 The best scores are: opt bits E(32554) CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4 ( 80) 521 149.5 2.1e-37 CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12 ( 86) 238 72.1 4.5e-14 >>CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4 (80 aa) initn: 521 init1: 521 opt: 521 Z-score: 784.9 bits: 149.5 E(32554): 2.1e-37 Smith-Waterman score: 521; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 10 20 30 40 50 60 70 80 pF1KB6 GDAFIRGNNVLYISTQKRRM :::::::::::::::::::: CCDS37 GDAFIRGNNVLYISTQKRRM 70 80 >>CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12 (86 aa) initn: 236 init1: 236 opt: 238 Z-score: 366.1 bits: 72.1 E(32554): 4.5e-14 Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-73:1-72) 10 20 30 40 50 60 pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY ::: .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... CCDS90 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 10 20 30 40 50 70 80 pF1KB6 GDAFIRGNNVLYISTQKRRM :...:: :::::: CCDS90 GEVLIRCNNVLYIRGVEEEEEDGEMRE 60 70 80 80 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 18:16:06 2016 done: Sat Nov 5 18:16:06 2016 Total Scan time: 1.230 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]