FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6714, 133 aa
  1>>>pF1KB6714 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9856+/-0.00076; mu= 8.0734+/- 0.046
 mean_var=72.2731+/-14.131, 0's: 0 Z-trim(109.2): 15  B-trim: 0 in 0/51
 Lambda= 0.150864
 statistics sampled from 10684 (10698) to 10684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS6103.1 LSM1 gene_id:27257|Hs108|chr8           ( 133)  842 191.7 1.1e-49


>>CCDS6103.1 LSM1 gene_id:27257|Hs108|chr8                (133 aa)
 initn: 842 init1: 842 opt: 842  Z-score: 1005.2  bits: 191.7 E(32554): 1.1e-49
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
               70        80        90       100       110       120

              130   
pF1KB6 GLSIPRADTLDEY
       :::::::::::::
CCDS61 GLSIPRADTLDEY
              130   




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:16:35 2016 done: Sat Nov  5 18:16:36 2016
 Total Scan time:  1.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]