FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6714, 133 aa
  1>>>pF1KB6714 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3240+/-0.000322; mu= 6.1457+/- 0.020
 mean_var=76.4113+/-14.757, 0's: 0 Z-trim(116.6): 22  B-trim: 0 in 0/53
 Lambda= 0.146722
 statistics sampled from 27954 (27972) to 27954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.328), width:  16
 Scan time:  5.150

The best scores are:                                      opt bits E(85289)
NP_055277 (OMIM: 607281) U6 snRNA-associated Sm-li ( 133)  842 186.9   8e-48
NP_057284 (OMIM: 607288) LSM8 homolog, U6 small nu (  96)  184 47.6   5e-06


>>NP_055277 (OMIM: 607281) U6 snRNA-associated Sm-like p  (133 aa)
 initn: 842 init1: 842 opt: 842  Z-score: 979.5  bits: 186.9 E(85289): 8e-48
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB6 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
               70        80        90       100       110       120

              130   
pF1KB6 GLSIPRADTLDEY
       :::::::::::::
NP_055 GLSIPRADTLDEY
              130   

>>NP_057284 (OMIM: 607288) LSM8 homolog, U6 small nuclea  (96 aa)
 initn: 182 init1:  91 opt: 184  Z-score: 229.1  bits: 47.6 E(85289): 5e-06
Smith-Waterman score: 184; 33.3% identity (67.8% similar) in 90 aa overlap (7-95:2-91)

               10        20        30        40        50          
pF1KB6 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDI
             :..: . :..   :.  ::: ..: :...::  ::.: .. ::.  ...   ..
NP_057      MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV
                    10        20        30        40        50     

      60        70        80        90       100       110         
pF1KB6 PRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKD
         :...:::.::...:::: : .:   : ..  : .                        
NP_057 VLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH                   
          60        70        80        90                         

     120       130   
pF1KB6 RGLSIPRADTLDEY




133 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:16:36 2016 done: Sat Nov  5 18:16:37 2016
 Total Scan time:  5.150 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]