Result of FASTA (omim) for
pF1KB6715
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6715, 81 aa
1>>>pF1KB6715 81 - 81 aa - 81 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7896+/-0.000256; mu= 11.0250+/- 0.016
mean_var=56.3375+/-11.070, 0's: 0 Z-trim(120.6): 92 B-trim: 0 in 0/58
Lambda= 0.170874
statistics sampled from 35946 (36048) to 35946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.423), width: 16
Scan time: 3.940
The best scores are: opt bits E(85289)
NP_006147 (OMIM: 603171) NEDD8 precursor [Homo sap ( 81) 514 133.6 3.5e-32
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 307 82.7 1.4e-16
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 307 82.7 1.4e-16
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 307 82.7 1.4e-16
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 304 81.9 1.9e-16
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 304 81.9 1.9e-16
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 304 81.9 1.9e-16
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 304 81.9 1.9e-16
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 304 81.9 1.9e-16
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 304 81.9 1.9e-16
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 304 81.9 2e-16
XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 304 82.0 2.3e-16
XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 304 82.0 2.3e-16
XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 304 82.0 2.3e-16
XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 304 82.0 2.3e-16
XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 304 82.0 2.8e-16
NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 303 81.8 3.7e-16
NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 303 81.8 3.7e-16
NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 303 81.8 3.7e-16
NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 303 81.8 3.7e-16
NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 303 81.8 3.7e-16
NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 303 81.8 3.7e-16
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 303 82.1 9.1e-16
NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157) 162 47.0 7.9e-06
NP_002865 (OMIM: 600062) UV excision repair protei ( 409) 159 46.5 2.9e-05
NP_005868 (OMIM: 605595) splicing factor 3A subuni ( 793) 155 45.7 9.9e-05
NP_001257292 (OMIM: 600061) UV excision repair pro ( 308) 143 42.5 0.00035
NP_001257291 (OMIM: 600061) UV excision repair pro ( 362) 143 42.5 0.0004
NP_005044 (OMIM: 600061) UV excision repair protei ( 363) 143 42.5 0.00041
XP_011526244 (OMIM: 607990) PREDICTED: E3 ubiquiti ( 758) 144 42.9 0.00062
NP_001276981 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 144 42.9 0.00065
NP_001041666 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 144 42.9 0.00065
NP_001276980 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 144 42.9 0.00065
NP_001276979 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 144 42.9 0.00065
NP_037414 (OMIM: 607990) E3 ubiquitin-protein liga ( 806) 144 42.9 0.00066
NP_079230 (OMIM: 616388) ubiquitin domain-containi ( 227) 137 40.9 0.00077
XP_016865511 (OMIM: 610174) PREDICTED: ubiquitin d ( 190) 136 40.6 0.00079
XP_016865512 (OMIM: 610174) PREDICTED: ubiquitin d ( 190) 136 40.6 0.00079
NP_001186626 (OMIM: 142590) large proline-rich pro ( 903) 143 42.7 0.00085
NP_689490 (OMIM: 610174) ubiquitin domain-containi ( 234) 136 40.7 0.00094
XP_016866787 (OMIM: 142590) PREDICTED: large proli (1028) 143 42.8 0.00095
XP_016866785 (OMIM: 142590) PREDICTED: large proli (1076) 143 42.8 0.00099
NP_001186627 (OMIM: 142590) large proline-rich pro (1077) 143 42.8 0.00099
XP_016866784 (OMIM: 142590) PREDICTED: large proli (1085) 143 42.8 0.00099
XP_016866786 (OMIM: 142590) PREDICTED: large proli (1094) 143 42.8 0.001
XP_016866783 (OMIM: 142590) PREDICTED: large proli (1100) 143 42.8 0.001
XP_016866782 (OMIM: 142590) PREDICTED: large proli (1108) 143 42.8 0.001
XP_016866781 (OMIM: 142590) PREDICTED: large proli (1125) 143 42.8 0.001
NP_001092004 (OMIM: 142590) large proline-rich pro (1126) 143 42.8 0.001
NP_542434 (OMIM: 142590) large proline-rich protei (1126) 143 42.8 0.001
>>NP_006147 (OMIM: 603171) NEDD8 precursor [Homo sapiens (81 aa)
initn: 514 init1: 514 opt: 514 Z-score: 698.8 bits: 133.6 E(85289): 3.5e-32
Smith-Waterman score: 514; 100.0% identity (100.0% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGGGGLRQ
:::::::::::::::::::::
NP_006 ILGGSVLHLVLALRGGGGLRQ
70 80
>>NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal prote (156 aa)
initn: 313 init1: 303 opt: 307 Z-score: 418.8 bits: 82.7 E(85289): 1.4e-16
Smith-Waterman score: 307; 55.6% identity (81.5% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_002 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGGGGLRQ
: :.::::: ::::. :.
NP_002 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
>>NP_001129064 (OMIM: 191343) ubiquitin-40S ribosomal pr (156 aa)
initn: 313 init1: 303 opt: 307 Z-score: 418.8 bits: 82.7 E(85289): 1.4e-16
Smith-Waterman score: 307; 55.6% identity (81.5% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGGGGLRQ
: :.::::: ::::. :.
NP_001 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
>>NP_001170884 (OMIM: 191343) ubiquitin-40S ribosomal pr (156 aa)
initn: 313 init1: 303 opt: 307 Z-score: 418.8 bits: 82.7 E(85289): 1.4e-16
Smith-Waterman score: 307; 55.6% identity (81.5% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGGGGLRQ
: :.::::: ::::. :.
NP_001 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
>>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 312 init1: 303 opt: 304 Z-score: 416.1 bits: 81.9 E(85289): 1.9e-16
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-81:1-84)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGG---GGLRQ
: :.::::: :::: .:::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307948 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 312 init1: 303 opt: 304 Z-score: 416.1 bits: 81.9 E(85289): 1.9e-16
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-81:1-84)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGG---GGLRQ
: :.::::: :::: .:::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307947 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 312 init1: 303 opt: 304 Z-score: 416.1 bits: 81.9 E(85289): 1.9e-16
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-81:1-84)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGG---GGLRQ
: :.::::: :::: .:::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 312 init1: 303 opt: 304 Z-score: 416.1 bits: 81.9 E(85289): 1.9e-16
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-81:1-84)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGG---GGLRQ
: :.::::: :::: .:::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote (128 aa)
initn: 312 init1: 303 opt: 304 Z-score: 416.1 bits: 81.9 E(85289): 1.9e-16
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-81:1-84)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGG---GGLRQ
: :.::::: :::: .:::
NP_003 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307949 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 312 init1: 303 opt: 304 Z-score: 416.1 bits: 81.9 E(85289): 1.9e-16
Smith-Waterman score: 304; 56.0% identity (79.8% similar) in 84 aa overlap (1-81:1-84)
10 20 30 40 50 60
pF1KB6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80
pF1KB6 ILGGSVLHLVLALRGG---GGLRQ
: :.::::: :::: .:::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
81 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:11:08 2016 done: Sat Nov 5 04:11:09 2016
Total Scan time: 3.940 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]