FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6717, 84 aa
  1>>>pF1KB6717 84 - 84 aa - 84 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4592+/-0.000462; mu= 12.7089+/- 0.028
 mean_var=49.1302+/- 9.609, 0's: 0 Z-trim(115.0): 8  B-trim: 11 in 1/50
 Lambda= 0.182978
 statistics sampled from 15531 (15537) to 15531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.477), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS31965.1 SERP2 gene_id:387923|Hs108|chr13       (  65)  348 97.9   6e-22
CCDS3150.1 SERP1 gene_id:27230|Hs108|chr3          (  66)  287 81.8 4.2e-17


>>CCDS31965.1 SERP2 gene_id:387923|Hs108|chr13            (65 aa)
 initn: 348 init1: 348 opt: 348  Z-score: 507.6  bits: 97.9 E(32554): 6e-22
Smith-Waterman score: 348; 100.0% identity (100.0% similar) in 52 aa overlap (1-52:1-52)

               10        20        30        40        50        60
pF1KB6 MVAKQRIRMANEKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSGQPHKLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS31 MVAKQRIRMANEKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQS
               10        20        30        40        50        60

               70        80    
pF1KB6 PGDCQNFLKVVTSRGSHPTPKTGN
                               
CCDS31 IRMGM                   
                               

>>CCDS3150.1 SERP1 gene_id:27230|Hs108|chr3               (66 aa)
 initn: 175 init1: 175 opt: 287  Z-score: 420.4  bits: 81.8 E(32554): 4.2e-17
Smith-Waterman score: 287; 86.8% identity (88.7% similar) in 53 aa overlap (1-52:1-53)

               10        20         30        40        50         
pF1KB6 MVAKQRIRMANEKHSKNITQRGNVAKTLR-PQEEKYPVGPWLLALFVFVVCGSGQPHKLA
       ::::::::::::::::::::::::::: :   :::  :::::::::.::::::       
CCDS31 MVAKQRIRMANEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQ
               10        20        30        40        50        60

      60        70        80    
pF1KB6 SPGDCQNFLKVVTSRGSHPTPKTGN
                                
CCDS31 SIRMGM                   
                                




84 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:32:20 2016 done: Fri Nov  4 23:32:20 2016
 Total Scan time:  1.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]