FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6718, 134 aa 1>>>pF1KB6718 134 - 134 aa - 134 aa Library: /omim/omim.rfq.tfa 64369986 residues in 92320 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0221+/-0.000317; mu= 12.2951+/- 0.020 mean_var=59.5907+/-11.673, 0's: 0 Z-trim(114.1): 42 B-trim: 0 in 0/56 Lambda= 0.166144 statistics sampled from 24745 (24785) to 24745 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.268), width: 16 Scan time: 3.170 The best scores are: opt bits E(92320) XP_011541676 (OMIM: 147850) interleukin-5 isoform ( 134) 854 212.7 1.5e-55 XP_011541675 (OMIM: 147850) interleukin-5 isoform ( 134) 854 212.7 1.5e-55 NP_000870 (OMIM: 147850) interleukin-5 precursor [ ( 134) 854 212.7 1.5e-55 XP_005272045 (OMIM: 147850) interleukin-5 isoform ( 156) 854 212.8 1.7e-55 >>XP_011541676 (OMIM: 147850) interleukin-5 isoform X2 [ (134 aa) initn: 854 init1: 854 opt: 854 Z-score: 1118.8 bits: 212.7 E(92320): 1.5e-55 Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ 70 80 90 100 110 120 130 pF1KB6 EFLGVMNTEWIIES :::::::::::::: XP_011 EFLGVMNTEWIIES 130 >>XP_011541675 (OMIM: 147850) interleukin-5 isoform X2 [ (134 aa) initn: 854 init1: 854 opt: 854 Z-score: 1118.8 bits: 212.7 E(92320): 1.5e-55 Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ 70 80 90 100 110 120 130 pF1KB6 EFLGVMNTEWIIES :::::::::::::: XP_011 EFLGVMNTEWIIES 130 >>NP_000870 (OMIM: 147850) interleukin-5 precursor [Homo (134 aa) initn: 854 init1: 854 opt: 854 Z-score: 1118.8 bits: 212.7 E(92320): 1.5e-55 Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ 70 80 90 100 110 120 130 pF1KB6 EFLGVMNTEWIIES :::::::::::::: NP_000 EFLGVMNTEWIIES 130 >>XP_005272045 (OMIM: 147850) interleukin-5 isoform X1 [ (156 aa) initn: 854 init1: 854 opt: 854 Z-score: 1117.8 bits: 212.8 E(92320): 1.7e-55 Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:23-156) 10 20 30 pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLS :::::::::::::::::::::::::::::::::::::: XP_005 MGVVVGWIGDPGSGANAERFRAMRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLS 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB6 THRTLLIANETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 THRTLLIANETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYI 70 80 90 100 110 120 100 110 120 130 pF1KB6 DGQKKKCGEERRRVNQFLDYLQEFLGVMNTEWIIES :::::::::::::::::::::::::::::::::::: XP_005 DGQKKKCGEERRRVNQFLDYLQEFLGVMNTEWIIES 130 140 150 134 residues in 1 query sequences 64369986 residues in 92320 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Oct 24 21:53:50 2019 done: Thu Oct 24 21:53:51 2019 Total Scan time: 3.170 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]