FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6719, 84 aa
  1>>>pF1KB6719 84 - 84 aa - 84 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4609+/-0.000439; mu= 13.5825+/- 0.027
 mean_var=57.4729+/-11.393, 0's: 0 Z-trim(116.5): 3  B-trim: 0 in 0/52
 Lambda= 0.169178
 statistics sampled from 17154 (17156) to 17154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.871), E-opt: 0.2 (0.527), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS1059.1 RPS27 gene_id:6232|Hs108|chr1           (  84)  592 150.9 8.7e-38
CCDS42048.1 RPS27L gene_id:51065|Hs108|chr15       (  84)  571 145.8   3e-36


>>CCDS1059.1 RPS27 gene_id:6232|Hs108|chr1                (84 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 791.9  bits: 150.9 E(32554): 8.7e-38
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KB6 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
               10        20        30        40        50        60

               70        80    
pF1KB6 TVLCQPTGGKARLTEGCSFRRKQH
       ::::::::::::::::::::::::
CCDS10 TVLCQPTGGKARLTEGCSFRRKQH
               70        80    

>>CCDS42048.1 RPS27L gene_id:51065|Hs108|chr15            (84 aa)
 initn: 571 init1: 571 opt: 571  Z-score: 764.2  bits: 145.8 E(32554): 3e-36
Smith-Waterman score: 571; 96.4% identity (98.8% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KB6 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
       ::::.:::::: ::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
               10        20        30        40        50        60

               70        80    
pF1KB6 TVLCQPTGGKARLTEGCSFRRKQH
       ::::::::::::::::::::::::
CCDS42 TVLCQPTGGKARLTEGCSFRRKQH
               70        80    




84 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:33:04 2016 done: Fri Nov  4 23:33:04 2016
 Total Scan time:  1.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]