FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6719, 84 aa
  1>>>pF1KB6719 84 - 84 aa - 84 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5345+/-0.000222; mu= 13.1483+/- 0.014
 mean_var=58.3499+/-11.730, 0's: 0 Z-trim(123.6): 2  B-trim: 0 in 0/55
 Lambda= 0.167901
 statistics sampled from 43654 (43657) to 43654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.867), E-opt: 0.2 (0.512), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(85289)
NP_001021 (OMIM: 603702) 40S ribosomal protein S27 (  84)  592 149.9 4.4e-37
NP_057004 (OMIM: 612055) 40S ribosomal protein S27 (  84)  571 144.8 1.5e-35


>>NP_001021 (OMIM: 603702) 40S ribosomal protein S27 [Ho  (84 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 786.7  bits: 149.9 E(85289): 4.4e-37
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KB6 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
               10        20        30        40        50        60

               70        80    
pF1KB6 TVLCQPTGGKARLTEGCSFRRKQH
       ::::::::::::::::::::::::
NP_001 TVLCQPTGGKARLTEGCSFRRKQH
               70        80    

>>NP_057004 (OMIM: 612055) 40S ribosomal protein S27-lik  (84 aa)
 initn: 571 init1: 571 opt: 571  Z-score: 759.2  bits: 144.8 E(85289): 1.5e-35
Smith-Waterman score: 571; 96.4% identity (98.8% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KB6 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
       ::::.:::::: ::::.:::::::::::::::::::::::::::::::::::::::::::
NP_057 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
               10        20        30        40        50        60

               70        80    
pF1KB6 TVLCQPTGGKARLTEGCSFRRKQH
       ::::::::::::::::::::::::
NP_057 TVLCQPTGGKARLTEGCSFRRKQH
               70        80    




84 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:33:04 2016 done: Fri Nov  4 23:33:05 2016
 Total Scan time:  4.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]