FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6721, 91 aa
  1>>>pF1KB6721 91 - 91 aa - 91 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8750+/-0.000604; mu= 9.9151+/- 0.036
 mean_var=47.5924+/- 9.309, 0's: 0 Z-trim(109.9): 27  B-trim: 3 in 1/49
 Lambda= 0.185911
 statistics sampled from 11214 (11237) to 11214 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.345), width:  16
 Scan time:  1.290

The best scores are:                                      opt bits E(32554)
CCDS5438.1 LSM5 gene_id:23658|Hs108|chr7           (  91)  586 164.0 1.2e-41
CCDS47571.1 LSM5 gene_id:23658|Hs108|chr7          (  62)  400 114.1 8.5e-27


>>CCDS5438.1 LSM5 gene_id:23658|Hs108|chr7                (91 aa)
 initn: 586 init1: 586 opt: 586  Z-score: 861.5  bits: 164.0 E(32554): 1.2e-41
Smith-Waterman score: 586; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
               10        20        30        40        50        60

               70        80        90 
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
       :::::::::::::::::::::::::::::::
CCDS54 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
               70        80        90 

>>CCDS47571.1 LSM5 gene_id:23658|Hs108|chr7               (62 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 594.6  bits: 114.1 E(32554): 8.5e-27
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 62 aa overlap (30-91:1-62)

               10        20        30        40        50        60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                                    :::::::::::::::::::::::::::::::
CCDS47                              MKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                                            10        20        30 

               70        80        90 
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
       :::::::::::::::::::::::::::::::
CCDS47 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
              40        50        60  




91 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:34:10 2016 done: Fri Nov  4 23:34:11 2016
 Total Scan time:  1.290 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]