Result of FASTA (ccds) for
pF1KB6725
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6725, 92 aa
1>>>pF1KB6725 92 - 92 aa - 92 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7300+/-0.000607; mu= 11.4339+/- 0.036
mean_var=51.9061+/-10.387, 0's: 0 Z-trim(110.6): 47 B-trim: 182 in 1/49
Lambda= 0.178018
statistics sampled from 11717 (11766) to 11717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.361), width: 16
Scan time: 1.250
The best scores are: opt bits E(32554)
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 612 164.1 1.1e-41
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 574 154.3 9.6e-39
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 395 108.4 6.6e-25
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 ( 89) 375 103.2 2.3e-23
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 ( 87) 344 95.3 5.5e-21
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 332 92.2 4.9e-20
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 318 88.6 6e-19
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 290 81.4 1e-16
CCDS77002.1 CCL4L2 gene_id:9560|Hs108|chr17 ( 96) 251 71.4 9.3e-14
CCDS77001.1 CCL4L2 gene_id:9560|Hs108|chr17 ( 103) 243 69.4 4.1e-13
CCDS76999.1 CCL4L2 gene_id:9560|Hs108|chr17 ( 64) 239 68.2 5.6e-13
CCDS77004.1 CCL4L2 gene_id:9560|Hs108|chr17 ( 64) 239 68.2 5.6e-13
CCDS77000.1 CCL4L2 gene_id:9560|Hs108|chr17 ( 103) 241 68.8 5.8e-13
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 240 68.6 6.7e-13
CCDS77003.1 CCL4L2 gene_id:9560|Hs108|chr17 ( 86) 239 68.3 7.2e-13
CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 ( 120) 240 68.6 7.9e-13
CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 ( 137) 240 68.6 8.9e-13
CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7 ( 94) 237 67.8 1.1e-12
CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 ( 113) 235 67.3 1.8e-12
CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17 ( 120) 232 66.6 3.3e-12
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 225 64.7 9.8e-12
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 ( 119) 223 64.2 1.6e-11
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 ( 97) 218 62.9 3.3e-11
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 ( 99) 216 62.4 4.8e-11
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 ( 99) 214 61.9 6.9e-11
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 612 init1: 612 opt: 612 Z-score: 861.8 bits: 164.1 E(32554): 1.1e-41
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
10 20 30 40 50 60
70 80 90
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
::::::::::::::::::::::::::::::::
CCDS11 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 572 init1: 460 opt: 574 Z-score: 809.0 bits: 154.3 E(32554): 9.6e-39
Smith-Waterman score: 574; 94.6% identity (97.8% similar) in 93 aa overlap (1-92:1-93)
10 20 30 40 50
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:::::::::::::::::::: .:: :::::::::::::::::::::::::::::::::::
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
60 70 80 90
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:.:::::::.:::::::::::::::::::::::
CCDS32 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 388 init1: 366 opt: 395 Z-score: 560.6 bits: 108.4 E(32554): 6.6e-25
Smith-Waterman score: 395; 57.6% identity (88.0% similar) in 92 aa overlap (1-91:1-92)
10 20 30 40 50
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80 90
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:.:.: ::::.:::::::: :::.:: ::::.
CCDS11 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 (89 aa)
initn: 378 init1: 319 opt: 375 Z-score: 533.1 bits: 103.2 E(32554): 2.3e-23
Smith-Waterman score: 375; 60.9% identity (81.5% similar) in 92 aa overlap (1-92:1-89)
10 20 30 40 50 60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
:. .::: ::.:::::: : . .. . ::. ::: ::::.::.:: ::: :: ::
CCDS11 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
10 20 30 40 50
70 80 90
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:::.::::.::.::::...:::::.:::.:.:
CCDS11 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
60 70 80
>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 (87 aa)
initn: 342 init1: 212 opt: 344 Z-score: 490.2 bits: 95.3 E(32554): 5.5e-21
Smith-Waterman score: 344; 52.2% identity (83.7% similar) in 92 aa overlap (1-91:1-87)
10 20 30 40 50
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS32 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80 90
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:.:. ..:::::::: :::.:: ::::.
CCDS32 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 344 init1: 323 opt: 332 Z-score: 473.3 bits: 92.2 E(32554): 4.9e-20
Smith-Waterman score: 332; 49.5% identity (81.3% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
:.::.:::::.: . ::: ::: .. : :::.: .: .:. : .:: ::..::.:
CCDS11 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
10 20 30 40 50 60
70 80 90
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
.:.:.:...:::::.: ..::..:...::.:
CCDS11 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
70 80 90
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 299 init1: 279 opt: 318 Z-score: 453.7 bits: 88.6 E(32554): 6e-19
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-89:1-91)
10 20 30 40 50
pF1KB6 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
:..:.::. :: :.:: .. :.: . :. :::.::. .::.. : ::.::.::::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
60 70 80 90
pF1KB6 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:::..:.:::...::..::..::: :..:..
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa)
initn: 292 init1: 279 opt: 290 Z-score: 413.8 bits: 81.4 E(32554): 1e-16
Smith-Waterman score: 290; 55.0% identity (91.7% similar) in 60 aa overlap (30-89:48-107)
10 20 30 40 50
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:. :::.::. .::.. : ::.::.:::::
CCDS45 LGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSK
20 30 40 50 60 70
60 70 80 90
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
::..:.:::...::..::..::: :..:..
CCDS45 PGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
80 90 100
>>CCDS77002.1 CCL4L2 gene_id:9560|Hs108|chr17 (96 aa)
initn: 234 init1: 212 opt: 251 Z-score: 360.5 bits: 71.4 E(32554): 9.3e-14
Smith-Waterman score: 251; 43.2% identity (76.5% similar) in 81 aa overlap (1-80:1-81)
10 20 30 40 50
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS77 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80 90
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:.:. : .. : : :
CCDS77 PAVVAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
70 80 90
>>CCDS77001.1 CCL4L2 gene_id:9560|Hs108|chr17 (103 aa)
initn: 238 init1: 216 opt: 243 Z-score: 348.9 bits: 69.4 E(32554): 4.1e-13
Smith-Waterman score: 243; 47.7% identity (87.7% similar) in 65 aa overlap (1-64:1-65)
10 20 30 40 50
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .:: ...: :::::::::.:..:.::..::.:::: ::.
CCDS77 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80 90
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
:.:..
CCDS77 PAVVYRESASSAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
70 80 90 100
92 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:36:50 2016 done: Fri Nov 4 23:36:50 2016
Total Scan time: 1.250 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]