Result of FASTA (omim) for pF1KB6725
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6725, 92 aa
  1>>>pF1KB6725 92 - 92 aa - 92 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7127+/-0.000298; mu= 11.5933+/- 0.018
 mean_var=50.9131+/-10.418, 0's: 0 Z-trim(117.2): 66  B-trim: 1270 in 1/54
 Lambda= 0.179746
 statistics sampled from 28926 (28996) to 28926 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.34), width:  16
 Scan time:  3.630

The best scores are:                                      opt bits E(85289)
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  612 165.6   1e-41
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  574 155.8 9.5e-39
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  574 155.8 9.5e-39
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  395 109.3 8.8e-25
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  388 107.5 3.1e-24
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  375 104.1 3.1e-23
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  344 96.1 8.1e-21
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  332 93.0 7.2e-20
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  318 89.4 9.1e-19
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  290 82.1 1.6e-16
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  251 72.0 1.6e-13
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  243 69.9 7.1e-13
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- (  64)  239 68.8 9.8e-13
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- (  64)  239 68.8 9.8e-13
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103)  241 69.4   1e-12
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  240 69.2 1.2e-12
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- (  86)  239 68.9 1.3e-12
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  240 69.2 1.4e-12
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  240 69.2 1.6e-12
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  237 68.4 1.9e-12
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  237 68.4 1.9e-12
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  237 68.5 2.8e-12
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  235 67.9 3.2e-12
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  232 67.1 5.9e-12
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  232 67.1 5.9e-12
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  225 65.3 1.7e-11
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  223 64.8 2.9e-11
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  223 64.8 2.9e-11
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  223 64.8 2.9e-11
NP_001265665 (OMIM: 187011) C-C motif chemokine 5  ( 154)  224 65.1   3e-11
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  218 63.4 6.1e-11
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  216 62.9 8.8e-11
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  214 62.4 1.3e-10
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  189 55.9 1.1e-08
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  189 55.9 1.1e-08
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  178 53.1   8e-08
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  175 52.4 1.8e-07
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  175 52.4 1.9e-07
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  164 49.4   1e-06
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr (  94)  163 49.2 1.2e-06
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122)  163 49.2 1.4e-06
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123)  163 49.2 1.5e-06
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is (  96)  151 46.1   1e-05
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 (  95)  146 44.8 2.5e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114)  140 43.3 8.5e-05
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114)  140 43.3 8.5e-05
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  138 42.7 0.00011
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397)  141 43.8  0.0002
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114)  135 42.0 0.00021


>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 870.0  bits: 165.6 E(85289): 1e-41
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
               10        20        30        40        50        60

               70        80        90  
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       ::::::::::::::::::::::::::::::::
NP_002 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
               70        80        90  

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 572 init1: 460 opt: 574  Z-score: 816.7  bits: 155.8 E(85289): 9.5e-39
Smith-Waterman score: 574; 94.6% identity (97.8% similar) in 93 aa overlap (1-92:1-93)

               10        20         30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :::::::::::::::::::: .:: :::::::::::::::::::::::::::::::::::
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:::::::.:::::::::::::::::::::::
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
               70        80        90   

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 572 init1: 460 opt: 574  Z-score: 816.7  bits: 155.8 E(85289): 9.5e-39
Smith-Waterman score: 574; 94.6% identity (97.8% similar) in 93 aa overlap (1-92:1-93)

               10        20         30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :::::::::::::::::::: .:: :::::::::::::::::::::::::::::::::::
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:::::::.:::::::::::::::::::::::
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
               70        80        90   

>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs  (92 aa)
 initn: 388 init1: 366 opt: 395  Z-score: 565.9  bits: 109.3 E(85289): 8.8e-25
Smith-Waterman score: 395; 57.6% identity (88.0% similar) in 92 aa overlap (1-91:1-92)

               10        20         30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:.: ::::.:::::::: :::.:: ::::. 
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN 
               70        80        90   

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 383 init1: 361 opt: 388  Z-score: 556.1  bits: 107.5 E(85289): 3.1e-24
Smith-Waterman score: 388; 56.5% identity (88.0% similar) in 92 aa overlap (1-91:1-92)

               10         20        30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:.: :::..:::::::: :::.:: ::::. 
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN 
               70        80        90   

>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur  (89 aa)
 initn: 378 init1: 319 opt: 375  Z-score: 538.1  bits: 104.1 E(85289): 3.1e-23
Smith-Waterman score: 375; 60.9% identity (81.5% similar) in 92 aa overlap (1-92:1-89)

               10        20        30        40        50        60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
       :.  .::: ::.::::::   : . .. .   ::. ::: ::::.::.:: ::: :: ::
NP_002 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
               10           20        30        40        50       

               70        80        90  
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :::.::::.::.::::...:::::.:::.:.:
NP_002 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
        60        70        80         

>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like  (87 aa)
 initn: 342 init1: 212 opt: 344  Z-score: 494.8  bits: 96.1 E(85289): 8.1e-21
Smith-Waterman score: 344; 52.2% identity (83.7% similar) in 92 aa overlap (1-91:1-87)

               10         20        30        40        50         
pF1KB6 MQVSTAALAVLLCTMALCN-QFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
       :.. ...:..:. . :.:.  .:: ...: :::::::::.:..:.::..::.:::: ::.
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :.:.     ..:::::::: :::.:: ::::. 
NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN 
                    70        80        

>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform  (91 aa)
 initn: 344 init1: 323 opt: 332  Z-score: 477.7  bits: 93.0 E(85289): 7.2e-20
Smith-Waterman score: 332; 49.5% identity (81.3% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB6 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
       :.::.:::::.: . :::   :::  ..  : :::.: .: .:.  : .:: ::..::.:
NP_002 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
               10        20        30        40        50        60

               70        80        90  
pF1KB6 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       .:.:.:...:::::.: ..::..:...::.: 
NP_002 AVVFVTRKNRQVCANPEKKWVREYINSLEMS 
               70        80        90  

>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor  (93 aa)
 initn: 299 init1: 279 opt: 318  Z-score: 457.9  bits: 89.4 E(85289): 9.1e-19
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-89:1-91)

               10         20         30        40        50        
pF1KB6 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
       :..:.::.   :: :.:: ..  :.: .   :. :::.::. .::.. : ::.::.::::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
               10        20        30        40        50        60

       60        70        80        90  
pF1KB6 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       :::..:.:::...::..::..::: :..:..   
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
               70        80        90    

>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor  (109 aa)
 initn: 292 init1: 279 opt: 290  Z-score: 417.6  bits: 82.1 E(85289): 1.6e-16
Smith-Waterman score: 290; 55.0% identity (91.7% similar) in 60 aa overlap (30-89:48-107)

                10        20        30        40        50         
pF1KB6  MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
                                     :. :::.::. .::.. : ::.::.:::::
NP_116 LGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSK
        20        30        40        50        60        70       

      60        70        80        90  
pF1KB6 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       ::..:.:::...::..::..::: :..:..   
NP_116 PGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
        80        90       100          




92 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:36:50 2016 done: Fri Nov  4 23:36:51 2016
 Total Scan time:  3.630 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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