Result of FASTA (ccds) for
pF1KB6728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6728, 137 aa
1>>>pF1KB6728 137 - 137 aa - 137 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9650+/-0.000813; mu= 12.5930+/- 0.049
mean_var=53.6035+/-10.296, 0's: 0 Z-trim(105.2): 13 B-trim: 20 in 2/46
Lambda= 0.175177
statistics sampled from 8275 (8281) to 8275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.254), width: 16
Scan time: 1.350
The best scores are: opt bits E(32554)
CCDS12924.1 RPL28 gene_id:6158|Hs108|chr19 ( 137) 879 229.8 4.1e-61
CCDS46190.1 RPL28 gene_id:6158|Hs108|chr19 ( 163) 705 185.9 8.2e-48
CCDS46189.1 RPL28 gene_id:6158|Hs108|chr19 ( 169) 704 185.6 1e-47
CCDS46192.1 RPL28 gene_id:6158|Hs108|chr19 ( 87) 457 123.1 3.5e-29
CCDS46191.1 RPL28 gene_id:6158|Hs108|chr19 ( 69) 447 120.5 1.7e-28
>>CCDS12924.1 RPL28 gene_id:6158|Hs108|chr19 (137 aa)
initn: 879 init1: 879 opt: 879 Z-score: 1210.7 bits: 229.8 E(32554): 4.1e-61
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
70 80 90 100 110 120
130
pF1KB6 QKPVMVKRKRTRPTKSS
:::::::::::::::::
CCDS12 QKPVMVKRKRTRPTKSS
130
>>CCDS46190.1 RPL28 gene_id:6158|Hs108|chr19 (163 aa)
initn: 717 init1: 705 opt: 705 Z-score: 971.9 bits: 185.9 E(32554): 8.2e-48
Smith-Waterman score: 705; 98.2% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::::::::::::::::::::::::::::::::::::::::::..
CCDS46 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMVSWGLGIRLGET
70 80 90 100 110 120
130
pF1KB6 QKPVMVKRKRTRPTKSS
CCDS46 GQCCGEGPPTTGCNMGWRGMDSCFQPTPHTQHWPRGRLVECMG
130 140 150 160
>>CCDS46189.1 RPL28 gene_id:6158|Hs108|chr19 (169 aa)
initn: 704 init1: 704 opt: 704 Z-score: 970.2 bits: 185.6 E(32554): 1e-47
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMDMLASTGSGLCC
70 80 90 100 110 120
130
pF1KB6 QKPVMVKRKRTRPTKSS
CCDS46 SVAVQPWASSSTSLCLRTLICNMRVDRPYYSGLMRRLNVQNLLDCAHKS
130 140 150 160
>>CCDS46192.1 RPL28 gene_id:6158|Hs108|chr19 (87 aa)
initn: 490 init1: 457 opt: 457 Z-score: 637.4 bits: 123.1 E(32554): 3.5e-29
Smith-Waterman score: 457; 98.6% identity (100.0% similar) in 70 aa overlap (1-70:1-70)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
:::::::::.
CCDS46 VVVIKRRSGEFCLVWARERPLSRVWEL
70 80
>>CCDS46191.1 RPL28 gene_id:6158|Hs108|chr19 (69 aa)
initn: 460 init1: 447 opt: 447 Z-score: 625.3 bits: 120.5 E(32554): 1.7e-28
Smith-Waterman score: 447; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::
CCDS46 VVVIKRRSE
137 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:39:19 2016 done: Fri Nov 4 23:39:19 2016
Total Scan time: 1.350 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]